barSeed - Barley Seed Development Database

Probe CUST_6727_PI390587928

Source Contig U35_14554

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6727_PI390587928	Hv_44K_v2	CATCCTGCTGTATACTTAGGCCTCATTCCGTTTACATGATTTCGAAATCAAAGAATAGAA	1493	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.530	2.946	0.660	0.673	1.071	0.953
Raw	29.062	26.416	5.313	7.416	3.507	2.711

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34809.1	1807	2e-24	1546 - 1605	100	60 / 60	plus	ABC00086
JLOC1	JLOC1_22479.1	1657	8e-25	1501 - 1560	100	60 / 60	plus
Harvest21	ABC00086	1572	3e-25	1471 - 1530	100	60 / 60	plus	ABC00086
Harvest35	U35_14554	1596	3e-25	1494 - 1553	100	60 / 60	plus

Contig Sequence (1596 bp)

>U35_14554 1596 Hv_44K_v2
TCGAGCACTGTTGGCCTCCCGCCCGCCTACCCAACCCAGTAAAATACTGCCACCTATCCG
CCGGCGAAACGAAATGGCCCACGCCCGCGTCCTCCTCCTGGCGCTCGCCGTCCTGGCCAC
GGCCGCCGTCGCCGTCGCCTCCTCCTCCTCCTTCGCCGACTCCAACCCGATCCGGCCCGT
CACCGACCGCGCCGCCTCGACGCTCGAGTCCGCTGTCCTCGGCGCGCTCGGCCGCACCCG
CCACGCCCTCCGCTTCGCGCGCTTCGCCGTCAGGTACGGCAAGAGCTACGAGAGCGCGGC
GGAGGTGCGGAGGCGGTTCCGGATCTTCTCCGAGAGCCTCGAGGAGGTGCGCTCCACCAA
CCGGAAGGGCCTCCCCTACCGCCTCGGCATCAACCGCTTCTCGGACATGAGCTGGGAGGA
GTTCCAGGCGACCCGTCTCGGCGCGGCGCAGACCTGCTCGGCGACGCTCGCCGGCAACCA
CCTCATGCGGGACGCCGCCGCGCTCCCGGAGACCAAAGACTGGAGGGAGGATGGGATCGT
CAGCCCCGTCAAAAACCAGGCCCATTGCGGCTCCTGCTGGACGTTCAGCACTACTGGCGC
ACTTGAGGCAGCATATACTCAGGCCACTGGAAAGAACATCTCTCTTTCTGAGCAACAGCT
GGTTGACTGTGCTGGTGGGTTCAATAACTTTGGATGCAACGGAGGCCTTCCATCCCAGGC
GTTTGAGTACATCAAATACAATGGCGGGATCGACACCGAGGAGTCCTACCCTTACAAGGG
TGTCAATGGTGTCTGCCATTACAAGGCTGAAAATGCTGCGGTTCAGGTTTTGGACTCAGT
AAACATCACACTGAATGCCGAGGATGAACTGAAGAACGCCGTTGGGTTGGTTCGCCCAGT
GAGTGTGGCCTTTCAGGTGATTGACGGTTTCAGGCAGTACAAGAGCGGAGTTTACACCAG
CGACCATTGTGGCACTACCCCTGATGACGTGAACCACGCCGTCTTGGCAGTCGGCTATGG
TGTGGAGAACGGCGTCCCGTATTGGCTCATCAAGAACTCGTGGGGCGCCGACTGGGGTGA
CAATGGTTACTTCAAGATGGAAATGGGCAAGAACATGTGCGCTATTGCTACCTGCGCCTC
CTACCCTGTCGTGGCGGCATGAAGAAGCGCCAAATCGGCGAGTACAGTCTCGATTCGCCA
GACATGAATAAGGTGTTTTCAGCCCGAACAAGAACCTGAAGATTGGGGTATACAGGAACT
GAAACTTTGCTGTGAATACAAACCACAAGGACTACGGTTGCAGTGAGCCCCGTGCGTGTA
CTCTTCCTCTGTATGGTTGTATGGCTATATATGTAGGTGATCCAGCAATTTATTAGGGTT
TCTCATGTATGTCTACGACATTTTATTTCCGGGACAAATAAAATGGCCCATTCATAGTTC
AAAAAAAAAAAAAAAAACTGTCGATATCAGCAGGAAACTGGGCGCCACACATGCATCCTG
CTGTATACTTAGGCCTCATTCCGTTTACATGATTTCGAAATCAAAGAATAGAAAAAAAGT
AAAGAATTAGGATGCCCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g27030.2	363	0.0	protein\|oryzain gamma chain precursor, putative, expressed
Brachypodium v1_2	Bradi4g31440.2	364	0.0
Arabidopsis v10	AT3G45310.1	358	2e-159	Cysteine proteinases superfamily protein \| chr3:16628704-16630473 REVERSE LENGTH=358