barSeed - Barley Seed Development Database

Probe CUST_6725_PI390587928

Source Contig U35_14556

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6725_PI390587928	Hv_44K_v2	AACATCCTTTTACAACATCGGTGATCTAGAGATTCAAGAGAACCTAGCACGTGTCTGGGT	499	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67396.4	1547	2e-24	426 - 485	100	60 / 60	minus	ABC06868 ABC06869
MLOC	MLOC_67396.1	2460	2e-23	1247 - 1304	100	58 / 58	minus	ABC06868 ABC06869
MLOC	MLOC_67396.2	2115	2e-23	1247 - 1304	100	58 / 58	minus	ABC06868 ABC06869
MLOC	MLOC_67396.5	1349	2e-23	498 - 555	100	58 / 58	minus	ABC06868
JLOC1	JLOC1_44501.2	1545	8e-25	852 - 911	100	60 / 60	plus
JLOC1	JLOC1_44501.1	2236	1e-23	812 - 869	100	58 / 58	plus
Harvest21	ABC06868	741	3e-25	160 - 219	100	60 / 60	plus	ABC06868
Harvest35	U35_14556	1081	3e-25	500 - 559	100	60 / 60	plus

Contig Sequence (1081 bp)

>U35_14556 1081 Hv_44K_v2
TCATACTTACTCTTATAATGGATGAATCTACACTAAAATATGTCTAGTCCTTACAGATTT
CAATACATCTGTAGTTCATATTAAAATCCTTATATTTAGGAAGGGAGTATCATTCTATGA
AGGAATGAAGAGACGCAAACCAAGGAGTAGATTGCAATCGATGGAGGGAGCATCAGACAT
GTAAAATCAACAGGACAAAACCGGCAAATCACACCTCGTTTAAACCAAAATAATAACGCA
ATTATTTCTGGGCAAAAGCAAACGCCACCTCCGTCAACCAACCCTAACCGGTCTAAAAGG
TAACCATGACAAATCCTCCACCTAAGAGACAACATGCCTAGATCTAGATAGATAATGCAT
TGGAAATCATCAGCGATCATGGCATATACAGCGGCCGCTGCCTTGGTGGGTGCAATTCCA
TGAATATGCAGCTGTCACAGTTGAGTTTAGATTGTAAAAGACCAACTTATGATGCTCTTA
AAGCAGCAAACGCCACCCCAACATCCTTTTACAACATCGGTGATCTAGAGATTCAAGAGA
ACCTAGCACGTGTCTGGGTGGACATTGGTATTCAAGATCCATTGCTTTTGGACGTCCTGC
TTAATTCATTAGCCACCATAAATTCGGATCATCTGGGCATTAAGGAAATACAGTTCGGAG
GGTCAGAGTTTCAGAGCTGGAACGACAGCTTGAATACTGAAGAAGCTGGGTACAGTGTCC
ACAAGATCTAGAATGCAGAGTCGCGCGATTCTAGAAGCAGCTACCATTTTGGTAACAGGG
AGAAATCCAACAACGATTAGGCTAGAACACGCATCACGTGATCTTGACGCACTATCTTGC
AATTGAAAAGAACGACGACCTCCCCACCACTGCTAAGCATGAAGGATGCTGTCTACCTAT
ATTGTTGTGCAAACGACCTGTTTTGATCTCCGCCAGTCTACAGGATACGAAAAATTCAAG
TTGCACACGTGTAACGTTATGACCTGTTCGTTGTGCTGAGACACGCAAGTTTCACTCGAG
CTTCTCCATCTGGATGAAATATTACTAGTGAGATGATTGTTAAATATAAAAAAAAAAAAA
A

Homology of Contig U35_14556 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g37820.1	282	2e-51	protein\|oxidoreductase/ transition metal ion binding protein, putative, expressed
Brachypodium v1_2	Bradi2g41210.1	284	3e-55
Arabidopsis v10	None