barSeed - Barley Seed Development Database

Probe CUST_6724_PI390587928

Source Contig U35_14557

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6724_PI390587928	Hv_44K_v2	GAGCTTCTCCATCTGGATGAAATATTACTAGTGAGATGATTGTTAAATATTGTGGCCTAT	1205	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.204	1.315	1.157	1.060	0.390	0.475
Raw	392.713	670.261	521.151	733.750	96.199	127.267

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67396.1	2460	9e-22	1 - 55	100	55 / 55	minus	ABC06868 ABC06869
MLOC	MLOC_67396.2	2115	9e-22	1 - 55	100	55 / 55	minus	ABC06868 ABC06869
JLOC1	JLOC1_44501.3	1420	8e-25	1245 - 1304	100	60 / 60	plus
JLOC1	JLOC1_44501.2	1545	8e-25	1370 - 1429	100	60 / 60	plus
JLOC1	JLOC1_44501.1	2236	8e-25	2061 - 2120	100	60 / 60	plus
Harvest21	ABC06867	1289	3e-25	1206 - 1265	100	60 / 60	plus
Harvest35	U35_14557	1289	3e-25	1206 - 1265	100	60 / 60	plus

Contig Sequence (1289 bp)

>U35_14557 1289 Hv_44K_v2
GGCCCCGTCTCTCTTCTTCGTTTCCTCATCCACTATACACTGCTACGCTCCCTCCCGAGT
CCCAGTCTTGGTTCCTCAACCTCCGACGTGCCGCCCCGTTCATCCCGGCGGCGCGGCTGG
CCTAGAGGTCGGAACACGCGCCTCGCAATCTCCTCAGCACCACCAGCAGGGTATCAGCAG
CCAGCAAATAAGCCCGGCCGCACCAGGATGCTCCCCACCCTCCTCGGCGGCTACCTCACC
GTCTCCGCGCTACCGCTACCGCTCCCAACCGCGACAGCGACTCCGCGAACACGGATCCTC
CCTGGGCTCAGGCCCTCCTCCCGCCTCGTCGCCCGCCGAAGCGCAGGGGAAACGGTACAC
GCAACGGCTACAGAAGAGGAGGAGCAGGAGTGGAAGGAACTCCAGGAGGAGGGGCTCCCG
AGGCGGGGGCAGCACACAGAGGATGACCACGACCACGACCCCGAGATCGCGGACATTATG
GGGGACTACTTCGACGATCCCAAGAAAGCCCAGTCCCGTATGGAGGAGAGGATAAAGAAG
AAGCGGCACAAGATCGTGCAGGCCAAGACCGGCTCGCCCAATCCCATGAATGTCGTTTTC
AACAAGTTTGATTTCTCCAATTCATATATATGGTTTGAGTTCCACAATGCTCTATTGCCA
AAAGATGTGAAATTAATTTGTGATGCTCTGCGATCATGGCATATACTTGGACGCCTTGGT
GGGTGCAATTCCATGAATATGCAGGGTGGACATTGGTATTCAAGATCCATTGCTTTTGGA
CGTCCTGCTTAATTCATTAGCCACCATAAATTCGGATCATCTGGGCATTAAGGAAATACA
GTTCGGAGGGTCAGAGTTTCAGAGCTGGAACGACAGCTTGAATACTGAAGAAGCTGGGTA
CAGTGTCCACAAGATCTAGAATGCAGAGTCGCGCGATTCTAGAAGCAGCTACCATTTTGG
TAACAGGGAGAAATCCAACAACGATTAGGCTAGAACACGCATCACGTGATCTTGACGCAC
TATCTTGCAATTGAAAAGAACGACGACCTCCCCACCACTGCTAAGCATGAAGGATGCTGT
CTACCTATATTGTTGTGCAAACGACCTGTTTTGATCTCCGCCAGTCTACAGGATACGAAA
AATTCAAGTTGCACACGTGTAACGTTATGACCTGTTCGTTGTGCTGAGACACGCAAGTTT
CACTCGAGCTTCTCCATCTGGATGAAATATTACTAGTGAGATGATTGTTAAATATTGTGG
CCTATCTTGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14557 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g37820.1	282	2e-65	protein\|oxidoreductase/ transition metal ion binding protein, putative, expressed
Brachypodium v1_2	Bradi2g41210.1	284	8e-80
Arabidopsis v10	None