- Probe CUST_6717_PI390587928
- Source Contig U35_40824
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6717_PI390587928 | Hv_44K_v2 | TGTTATCCTTCTGGACCGAGAAAATTCCCGTTGTTAGAAGTCATTAAACTTGGCAAAAAA | 459 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.122 | 1.575 | 1.083 | 0.985 | 0.350 | 0.395 |
| Raw | 427.918 | 947.063 | 568.142 | 820.851 | 104.480 | 123.603 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354977 | 1461 | 2e-23 | 1365 - 1422 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_34336.3 | 800 | 9e-22 | 1 - 55 | 100 | 55 / 55 | minus | None |
| JLOC1 | JLOC1_22124.2 | 836 | 1e-23 | 746 - 803 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_40824 | 530 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_21219 | 797 | 5e-23 | 739 - 797 | 98 | 59 / 60 | plus |
Contig Sequence (530 bp)
>U35_40824 530 Hv_44K_v2 CAGAAGTAGTGGACACCACCGGTGCTGGCGACACCTTCACGTCAGCTTTTGCCGTGGCTC TGGTGGAAGGGAAGCCTAAGAAAGAGTGCATGAGATTTGCTGCCGCCGCCGCCTCACTGT GTGTTCGGGTAAAGGGAGCCATTCCCAGCATGCCTGACAGGGAAACCGTGATGAGCCTTC TAGAATCCGTGCAAGCCGAATAACCGGAGAAAATGGTGACTTTAGCCGCCCTATTCATCA GCAATAATGTGAGCTGTTAAGCCTCAATCTCCTTTCTGGGTTCATTTTGTTTCGGGCAAT GTATATTTGCGGCCCCGCTTCAAGTTATGGCGGAGGAAATAAGAGAAAATGGCATTCCTC GTGCCGTGCCGTCCTCCGTAGAAGTTCAGGAGTTGTAGGTCTGTTGCTTTTATAGTCGTT CCCTGTTACGCCATAGCATTTCTACTGTTAGGCATTGCCTGTTATCCTTCTGGACCGAGA AAATTCCCGTTGTTAGAAGTCATTAAACTTGGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_40824 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |