barSeed - Barley Seed Development Database

Probe CUST_6711_PI390587928

Source Contig U35_40829

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6711_PI390587928	Hv_44K_v2	GAAGAGATATTTTCACTCTAGCGAAAACTCCTAAAAAAGAAGGATCCAACCCATGGCATT	300	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48637.1	341	3e-22	189 - 247	98	59 / 60	minus	ABC02444 ABC20692
JLOC1	JLOC1_31213.1	340	1e-22	189 - 247	98	59 / 60	minus
Harvest35	U35_40829	724	3e-25	301 - 360	100	60 / 60	minus
Harvest35	U35_680	1151	8e-21	976 - 1035	95	57 / 60	minus

Contig Sequence (724 bp)

>U35_40829 724 Hv_44K_v2
CTCTCTTAGTATAATCATCTCTATCACTTCTCTAATGATGGTTGCCATCCTGGTGTCCTC
AATGTAGACTCTAACACGCCAATTTTCTTTGTAGGATCTGGCTCTATGGTATAGATGCAA
TAATGTGTGATGCCTGGGTGGGAAAAGCACACACTTCTACTTAACTATTAGTGGAAGCAC
CTTGTATTTGCTGGATTTGAGAATCTAAAACATTGCTCTTGTCTTGTCGGCCAACAAATG
TTTATGCCTTGATGCCAGAAGTATTTCTTCCCATCCAATCTTGTTCTTTGTTGTTCCGTA
AATGCCATGGGTTGGATCCTTCTTTTTTAGGAGTTTTCGCTAGAGTGAAAATATCTCTTC
AGCCTTTTCTTGCACAACAGTATCATGCTGCCTTTTCATATGATTCATCTCTATATTAAT
ATGGGCTGTTAAAGCATCCTTATCCATTGGTTTCAAGTACGATGGATCACCAAAAACCTT
GTCAGGAGAGACTTTAAGACAGTCATCCTTTGCAGGACCATTTCTGGAGGAATGTTCCTT
GTCTATGTTTTACTCACATCTTCTGTGCCATCAAAGTTATGCTGGGATCTCGAAAGCCCC
ACTCAGAAATCAAGAGTGGGAAATGACACCAAGCTGTTGGTGAATACTATAAACTTCATC
ATATTTTCTATCCCAACCCTTCAGCAAACTTAAGCTACCATTTCCAAGCTGCAGTAGCCT
TTGG

Homology of Contig U35_40829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None