barSeed - Barley Seed Development Database

Probe CUST_670_PI390587928

Source Contig U35_14063

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_670_PI390587928	Hv_44K_v2	TAGGTTTCGGGTCACCGGTAATACTGAGCAGTAGCTGTTCTTGTCCTGTGATCCGGATGT	595	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.522	1.413	1.127	0.936	0.542	0.435
Raw	29706.733	43702.200	29725.767	38118.800	7841.527	6906.647

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365118	798	2e-24	651 - 710	100	60 / 60	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138 ABC47839
MLOC	MLOC_29895.1	818	2e-24	542 - 601	100	60 / 60	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138 ABC47839
MLOC	MLOC_29895.2	661	2e-24	416 - 475	100	60 / 60	plus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00106 ABC00130 ABC00135 ABC00141 ABC00186 ABC00196 ABC00204 ABC00338 ABC00349 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00787 ABC00971
JLOC1	JLOC1_19842.1	803	8e-25	543 - 602	100	60 / 60	plus
Harvest21	ABC00720	655	3e-25	596 - 655	100	60 / 60	plus
Harvest35	U35_14063	655	3e-25	596 - 655	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_14063 655 Hv_44K_v2
CACCTCTCCTCTCCCCCTCGTGCCGCCGCCCAAGATTCCGGCGACAGCAGCCGGCAGGGG
CACGCCGGAAGGCCGCCACGCGCACGAGGCCTCCCACTTTCATCTTCCAGTTCACCACCG
CGAAGTGAAATCCCAATCTCCAATCGCCACAGCGAACAGCAGCCGCCAGATCCTTCCCCC
CAGCTCCGATGGCCTGCACGAAGCAGACGGCCCGCAAGTCCACCGATGGCAAGGCGCCGA
GGAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGACGGCGTGAAGA
AGCTCCACCGCTTCCGCTCTGGAACCGTTGCCCTCCGGGAGACCGCAAGTACCAGAAGAG
CACAGAGTTGCTTATCCGCAAGCTACCCTTCCAGCGCCTCGTCCGGGAGATCGCGCAAGA
CTTCAAGACCGACCTCCGCTTCCAGTCCTCCGCCGTCTCCGCGCTCCAGGAGGCCACCGA
GGCGTACCTCGTCGGGATGTTCGATGACACCAACATCTGCGCCATCCACGTCAAGCGCGT
CACCATCATGCCCAAGGACATCCAGCTCGTCTGCCGCATCCGTGGGGAGCGCGCCTAGGT
TTCGGGTCACCGGTAATACTGAGCAGTAGCTGTTCTTGTCCTGTGATCCGGATGT

Homology of Contig U35_14063 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g34240.1	275	1e-58	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-57
Arabidopsis v10	AT5G65360.1	136	3e-57	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136