barSeed - Barley Seed Development Database

Probe CUST_6704_PI390587928

Source Contig U35_38514

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6704_PI390587928	Hv_44K_v2	AGATGAAGAGTTGCTGCGTGATGATGAGGTTCTCACCCCTGTTAAACCAGAAGGTATAAG	436	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.377	1.003	1.056	0.756	0.535	0.414
Raw	559.219	585.536	583.483	597.846	161.991	138.744

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375083	2708	2e-24	1127 - 1186	100	60 / 60	plus	ABC15974 ABC19459
MLOC	MLOC_75935.2	1392	2e-24	679 - 738	100	60 / 60	minus	ABC15974
MLOC	MLOC_75935.1	1494	2e-24	779 - 838	100	60 / 60	minus	ABC15974
JLOC1	JLOC1_50651.2	1640	8e-25	658 - 717	100	60 / 60	plus
JLOC1	JLOC1_50651.1	1590	8e-25	655 - 714	100	60 / 60	plus
Harvest35	U35_38514	496	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_38514 496 Hv_44K_v2
GGAAGCAGCAGCAGATGATGCGCCAGTCGCAGGCCACCATTCTGCAGAAGACACAGCAGG
TGCGCGCCGCGCAACAGCAGCAGCAGCCACAGCCGCAGAGCCGCCACCTCCAGCCATCAG
GTGGGACTCGGGTGGCGACAACTGTGTCTCGCCCAGTCTCCGCACCAAACACTGAGAGGT
TCGAGAATCGGCTCAAGAAGCCGACAACGTTCCTCTGCAAGCACAAGTTCAGGAATGAAC
TGCCAGATCCAAGTGCTCAATTGAAATGGCTGCCTCTGAATAAGGACAAGGACCGATATA
CCAAATACAGGATCTCATCATTGGAGAAAAACTATCTACCTAAAATGATTGTCCCCGAGG
ATCTCGGGATACCTCTTGACCTACTTGATATGGCTGTATACAACCCTCCCAATGTTCAGC
TGCCCCTGGCTCCAGAAGATGAAGAGTTGCTGCGTGATGATGAGGTTCTCACCCCTGTTA
AACCAGAAGGTATAAG

Homology of Contig U35_38514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06070.1	452	9e-68	protein\|ELF7, putative, expressed
Brachypodium v1_2	Bradi3g16550.1	451	2e-75
Arabidopsis v10	None