barSeed - Barley Seed Development Database

Probe CUST_66_PI415269222

Source Contig TA39891_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_66_PI415269222	Hv_44K_v2	ACTTGCCTTTTGTTAGTTCTTCAATGAAGAAAGAACTGCTTATCTATTTCCGTGTTAGTC	1113	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.051	3.397	0.614	0.980	1.047	0.932
Raw	13.819	32.859	4.577	14.537	2.953	2.918

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45216.1	2176	8e-25	2013 - 2072	100	60 / 60	plus

Contig Sequence (1173 bp)

>TA39891_4513 1173 Hv_44K_v2
CCCCCCAAGGCGGCGGCGTCATCGACGGCTCCGGCTCGAAGTGGTGGGCCAACTCCTGCA
AGGTCGACCGGTCTAAGCCGTGCAAGGGCGCGCCGACGGCGGTGACCATCGACTCGTGCC
GTGGCGTGCGGGTGCGCGGCCTGACGATCCAGAACGCGCAGCAGATGCACCTGACGGTGT
CGCGGTCGCGCGGGGTGCGGCTGGACGGGATGGCCATCCAGGCGCCGGGGGACAGCCCCA
ACACCGACGGCATCCACGTGGCCGAGTCCACCGCGGTGACCATCACCGGCGCGCGCATCG
GCACCGGCGACGACTGCGTGTCCATCTCCAACGCCAGCTTCGCCGTGAAGATGAAGGGCA
TCGTGTGCGACCCGGGCCACGGCATCAGCATCGGCAGCCTGGGGCAGGGCGGCTCCTACG
CCGCCGTGGAGGGGGTGACCCTCGACGGCGCCCGCATCGCGCGCGCCCAGAACGGCGTCC
GGATCAAGACCTGGCAGGGCGGCGCCGGGTACGTGCGCAACGTCCGGTTCACCAACGTGC
TCGTCGACGGCGTCGACCACCCCATCATCATCGACCAGTTCTACTGCGACTCCAGGACGC
CGTGCGCGAACCGGAGCACCAACGTGGCCGTCAGCAACGTCATGTACCGGAACATCTCCG
GCACGTCCACGCGGGACGAGGCCATCAAGCTCGCCTGCAGCGACGCCGTGCCATGCAGCG
ACATCGTGCTCAGCAACATCAACCTGCTCGGGGACGACGGCGCCGAGGTGCAGGCCGTGT
GCAACTGCGCCATGGGGCTGGGCTACGACCCCGTCCGCCCCGCCGTCGACTGCCTCAGGA
ACAACGCGTGCGGCGGCGGCGGAGGGCTGAAGCTAGGCGAGGAGGAGGAGCCGTCGACGA
CGACGGCCGCGCCGCTGCACACCGAGCTGTGAAAATCGGACATGATGCCCTTTGCTCGAT
TTTCACCCCAGCTGTTACTAAGTGCTGCAGTTAAGTAACTACTAGGTTTTTTGTTTGTGT
GTCTATATCGTCTGAAGTATCGATAAATTAAGATCTACTGTACTGTACTACGATGTTACA
TGCATGTACACATGGTGATCGGCGAGAAAAACCACTTGCCTTTTGTTAGTTCTTCAATGA
AGAAAGAACTGCTTATCTATTTCCGTGTTAGTC

Homology of Contig TA39891_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g03750.1	509	3e-137	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi3g02850.1	510	9e-156
Arabidopsis v10	AT1G23460.1	460	7e-103	Pectin lyase-like superfamily protein \| chr1:8327382-8329622 FORWARD LENGTH=460