barSeed - Barley Seed Development Database

Probe CUST_669_PI390587928

Source Contig U35_14064

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_669_PI390587928	Hv_44K_v2	TCTGGTCCTGATGTGTTGTCATGCTCGAATGAAATTCCAGTGGAAAGTTGAGTTAAAAAA	574	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36458.1	659	9e-22	480 - 534	100	55 / 55	minus	ABC00014
JLOC1	JLOC1_23473.1	645	5e-22	465 - 519	100	55 / 55	minus
Harvest21	ABC00014	641	3e-25	574 - 633	100	60 / 60	plus	ABC00014
Harvest35	U35_14064	645	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_14064 645 Hv_44K_v2
AGTGAAATCCCAGCCTCCAATCGCCACAGCGAACAGCAGCAGCAGCCGCCAGATCCCTCT
CCCCCAGCTCCGATGGCCCGCACGAAGCAGACTGCCCGCAAGTCCACCGGCGGCAAGGCG
CCGCGGAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCGCCAGCGACCGGCGGCGTC
AAGAAGCCCCACCGCTTCCGCCCTGGAACCGTCGCGCTCCGTGAGATCCGCAAGTACCAG
AAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTGCGGGAGATCGCG
CAGGACTTCAAGACCGACCTCCGCTTCCAGTCCTCCGCCGTCTCCGCGCTCCAGGAGGCC
GCCGAGGCCTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAG
CGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGCGGGGAGAGGGCC
TAGGTTTGCCGTGCTCGCCGGTGACACTGGCCAGTGGCTGTTCTTGTCGTGTGTGCCTGG
TGCTTCTGTTTGTTTTTGTTGATATGATGCGTCGTCTGGTCCTGATGTGTTGTCATGCTC
GAATGAAATTCCAGTGGAAAGTTGAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14064 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	6e-89	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	9e-90
Arabidopsis v10	AT5G65360.1	136	3e-89	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136