barSeed - Barley Seed Development Database

Probe CUST_6699_PI390587928

Source Contig U35_14560

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6699_PI390587928	Hv_44K_v2	GGCCATTTTGTATCTGCTTTCCCATTCATATCTTAATAAAAAGATGGGTTATGATGGATG	482	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250641.1	3366	2e-24	3307 - 3366	100	60 / 60	plus	ABC03738 ABC03741
MLOC	MLOC_75685.1	3010	2e-24	49 - 108	100	60 / 60	minus	ABC03738 ABC03741
JLOC1	JLOC1_50492.2	3026	8e-25	2903 - 2962	100	60 / 60	plus
JLOC1	JLOC1_50492.1	2600	8e-25	2477 - 2536	100	60 / 60	plus
Harvest21	ABC03740	559	3e-25	483 - 542	100	60 / 60	plus
Harvest35	U35_14569	523	3e-25	420 - 479	100	60 / 60	plus
Harvest35	U35_14560	559	3e-25	483 - 542	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_14560 559 Hv_44K_v2
AAACAAGGCTGTCATTTATGCGGGTGTACCTCCCGACGCACCCAATGGCTTCAAGGTGTT
GGATTGGCTTACGCCTTCAATCGCACCACTCAAGGGGAAAGGAGGCGGCGGCAAGAATGG
CCTCGCCCAGGGCCAGGGAAGTGATGCTTCTCGGGTCAAGGAGGCCATGGAGCTTGCTAC
CCAGATAGCTTCAATGAAGCTGAGCTGATTTGTTGAGACTCGTCTGGTCTCTTGATAAGT
GTGCTTTTAGAACCTGAAGTGTCAAGTGTTTGCTTGGGAAGCGCGGTGGATGCATCATTC
CCTATCCCTGGCAGCGATGACAGCAACCTAGAGGTAAATGGGCTCTGAAGTTGTGGACAT
ATCGTCGAGTAGCACTCGGGGGCCCTCACGGCTAGGTTGGTTGGTTTGTTTGTTTGTTGT
TGTTAGGGTGCTTGTGAGGCTATTGTTGTAAGCCTCTGCTGCGCTTATGTGACATGTAAC
CTGGCCATTTTGTATCTGCTTTCCCATTCATATCTTAATAAAAAGATGGGTTATGATGGA
TGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None