- Probe CUST_6698_PI390587928
- Source Contig U35_38519
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_6698_PI390587928 | Hv_44K_v2 | ATTGTTCAGCTTTAATAACTTCTAGGTGGTGGCCTCGTGTCACTTACAATAACAGAGTGT | 34 | GeneList: red MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.274 | 1.612 | 1.598 | 0.839 | 0.360 | 0.398 |
Raw | 6246.143 | 12030.493 | 10523.720 | 8809.397 | 1287.490 | 1563.953 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_45371.1 | 2234 | 7e-23 | 1927 - 1986 | 98 | 59 / 60 | plus | ABC14656 |
MLOC | MLOC_45371.2 | 1976 | 7e-23 | 1819 - 1878 | 98 | 59 / 60 | plus | ABC14656 |
JLOC1 | JLOC1_29455.1 | 2035 | 4e-23 | 1820 - 1879 | 98 | 59 / 60 | plus | |
Harvest21 | ABC14656 | 1387 | 8e-21 | 1239 - 1300 | 95 | 59 / 62 | plus | ABC14656 |
Harvest35 | U35_38519 | 462 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus | |
Harvest35 | U35_20989 | 1386 | 6e-22 | 1239 - 1299 | 97 | 59 / 61 | plus |
Contig Sequence (462 bp)
>U35_38519 462 Hv_44K_v2 TTTTTTTTTTTTTTTTTGACAAGATAAGCAACAAACACTCTGTTATTGTAAGTGACACGA GGCCACCACCTAGAAGTTATTAAAGCTGAACAATCATCACTCTGATACAAGTTGAGAACA CGACTAAAAAATACAGCCAAATCCTCTCACGCTCTGCCGGCGAACGTGCAAAGTAACAGC ACAAGAAATGCGTGCCCCACCCCCTCACACAGTTGAAACATGACTTCCAGCGTGCAGTGA AGTTGGCAACGACAGTATCAGATCTTAGATATAGCTTGAAGCTTCAGCAAAGGACTCCCA GTGATACTAACCAACATAGTTATTTGCAGCTACTAGAAGGGTAAATAAAATGTTTTTTTT ACAACATTCTACTGCTGCAGCGAGTAATCGATTTGCATGACGTCTACTGTAGATCCTAAC CAGCCAGGCCTTAAGCATAGGAACAAAGTAACGCTGGGAAGT
Homology of Contig U35_38519 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |