barSeed - Barley Seed Development Database

Probe CUST_6697_PI390587928

Source Contig U35_14561

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6697_PI390587928	Hv_44K_v2	CGGTTATGTGACATGTAACTTGGCCATTTTGTATCTGCTTTCCCATTCATATCTTAATAA	2027	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75685.1	3010	3e-21	70 - 126	98	56 / 57	minus	ABC03738 ABC03741
JLOC1	JLOC1_50492.2	3026	2e-21	2885 - 2941	98	56 / 57	plus
JLOC1	JLOC1_50492.1	2600	2e-21	2459 - 2515	98	56 / 57	plus
Harvest21	ABC03741	2090	3e-25	2028 - 2087	100	60 / 60	plus	ABC03741
Harvest21	ABC03740	559	6e-22	465 - 521	98	56 / 57	plus
Harvest35	U35_14561	2090	3e-25	2028 - 2087	100	60 / 60	plus
Harvest35	U35_14560	559	6e-22	465 - 521	98	56 / 57	plus

Contig Sequence (2090 bp)

>U35_14561 2090 Hv_44K_v2
CCTGAGCTGAAGGACAATGAAAAGAATATTAAAGATATAATTAAAGAAGAAGAGGCAAGC
TTTGAGAGCACTCTAGCAAAGGGATATGAGAGATTTAAGAAAGCCGCAGATGCTGTCAAG
GAGAATGGCGGGACTGTACTTAGTGGCCAGGATGCATTTGTTCTGTGGGACACCTATGGC
TATCCAATTGATTTGACTGAGGTCATGGCAGTAGACTTCGGGCTATCTGTTGACATGGAG
GGTTTTAATATTGCTATGGAAGAAGCAAGACAAAAGGCTAGAAATGCTCGCTACAAGGCT
GGTGGCAAGTCTATTGTCCTGGATGCTAATGCTACATCGCACCTGCGCAATCAGGGGCTT
GCCAGCACAAATGATAGCCCGAAATTCAAACACGAGGTACATAGCAGTGTGGTAAAAGCT
ATCTATACTGGCTCAGAGTTCATAGCCACTGCATCTGGTGATGAAGATTTTGGCCTTGTT
TTGGAAAGCACAAGCTTCTATGCGGAACAGGGTGGTCAGATCTATGACACTGGGAGTATC
GAGGGGCCAACTGGATCTTTCACTGTGAACAATGTCCAAGTGTTTGCTGGCTATGTCCTG
CATATCGGTTCATTTCTGGAAGGGCCTAACTCCAAGGCATTATCTGTTGGTGATGAAGTG
AAATGCAAAGTTGATTACACACGGCGTACTCTCATTGCTCCAAACCACACATGTACCCAT
ATGCTGAACTTTGCTCTAAGGGAAGTACTTGGTGACCATATTGACCAGAAAGGTTCCATT
GTTCTTCCAGAGAAGCTGAGATTTGATTTCTCCCATGGGAAACCTGTTCAGCCTGAAGAT
CTGAGAAAAATTGAGTATATAGTGAACCAGCAAATAAAGGATGAGCTGGAGGTATCTGCA
CAAGAAATAAAATTGGTTGACGCAAAGCGCATAAATGGTCTGCGAGCTGTGTTTGGTGAA
ATCTACCCTGATCCTGTAAGAGTTGTATCGATTGGCCGCAAAGTGGAAGATCTGCTTGCA
AACCCTGAAAGCAAAGAATGGTTATCCATATCAACTGAGCTGTGTGGAGGTACACACATT
TCAAACACTAGAGATGCTGCAGCATTTGCTCTCATATCTGAAGAGGGTATCGCAAAAGGT
GTTCGGAGGATAACGGCTGTTACTGCTGAGTGTGCCTCACAGGCTATGAAGTTGGCATCA
TCTATCGATAGTGATATCAATGAAGCATCTAAACTGGACGGGGCGACATTGGAAAAGAAA
ATTGGGTCCATCAAGAATACACTGGATGCAGCTGCTATCCCAGCTGCAAGAAAAGCTGAT
CTAAAAGGCAATATCTCAAAGCTGGAGGAGCAACTTAGGGAGGCGAAGAAGAAAATGGGC
AAAGAAAATATCCAAAAGGCTGTCAAGACTGCCATAGATGCCGCAGAAGCTGCTGTTTCT
GAAGGAAAATCCTTCTGTGTTACCCACGCCGATGTGGGCCTTGATACCACTGCTGTCCGG
GAAGCAGTTGTCAAAGCCATGGACCGGTTCAAGGGTCTGCCGATAATGGTATTCAGCACA
GACGAGGCATCAAACAAGGCTGTCATTTATGCGGGTGTACCTCCCGACGCACCCAATGGC
TTCAAGGTGTTGGATTGGCTTACGCCTTCAATCGCACCACTCAAGGGGAAAGGAGGCGGC
GGCAAGAATGGTCTCGCCCAGGGCCAGGGAAGTGATGCTTCTCGGGTCAAGGAGGCCATG
GAGCTTGCTACCCAGATAGCTTCAATGAAGCTGAGCTGATTTGTTTAGACTCGTCTGGTC
TCTTGATAAGTGTGCTTTTAGAACCTGAAGTGTCAAGTGTTTGCTTGGGAAGCGCGGTGT
ATGCATCATTCCCTATCCCTGGCAGCGACGACAGCAACCTAGAGGTAAATCGGCTCTGAA
GTTGTGGACATATCGTCGAGGAGCACTCGGCGGCCCTCACGGCTAGGTTTGTTTGTTTGT
TGTTGTTGTTAGGGTGCTTGTGAGGCTATTGTTGTAAGCCTCTGCTGCGGTTATGTGACA
TGTAACTTGGCCATTTTGTATCTGCTTTCCCATTCATATCTTAATAAAAA

Homology of Contig U35_14561 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g10244.1	1000	protein\|alanyl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi3g22760.1	999
Arabidopsis v10	AT1G50200.1	1003	\| Symbols: ALATS, ACD \| Alanyl-tRNA synthetase \| chr1:18591429-18598311 REVERSE LENGTH=1003