barSeed - Barley Seed Development Database

Probe CUST_6692_PI390587928

Source Contig U35_14566

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6692_PI390587928	Hv_44K_v2	CACAGTTGTCGTGTAATTACAGTTTGGTTTATCAAATGGAGTGTTATATTTGACGAACGA	3209	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365338	3269	2e-24	3182 - 3241	100	60 / 60	plus	ABC03738 ABC03741
MLOC	AK252546.1	3442	2e-24	3312 - 3371	100	60 / 60	plus	ABC03738 ABC03741
MLOC	MLOC_62869.2	1998	2e-24	1851 - 1910	100	60 / 60	plus	ABC03738 ABC03741
MLOC	MLOC_62869.1	2097	2e-24	1952 - 2011	100	60 / 60	plus	ABC03738 ABC03741
MLOC	MLOC_62869.5	2029	2e-24	1888 - 1947	100	60 / 60	plus	ABC03738 ABC03741
MLOC	MLOC_62869.6	2031	2e-24	1890 - 1949	100	60 / 60	plus	ABC03738 ABC03741
MLOC	MLOC_62869.3	1942	2e-24	1798 - 1857	100	60 / 60	plus	ABC03738 ABC03741
MLOC	MLOC_62869.4	1940	2e-24	1796 - 1855	100	60 / 60	plus	ABC03738 ABC03741
JLOC1	JLOC1_41167.2	2000	8e-25	1794 - 1853	100	60 / 60	plus
JLOC1	JLOC1_41167.1	1990	8e-25	1784 - 1843	100	60 / 60	plus
Harvest21	ABC03738	3305	3e-25	3150 - 3209	100	60 / 60	plus	ABC03738
Harvest35	U35_14566	3377	3e-25	3210 - 3269	100	60 / 60	plus

Contig Sequence (3377 bp)

>U35_14566 3377 Hv_44K_v2
CCTGACCGTTCATTAACTGAAGCCTCTGTATGTTGCACTCGGCCCTGACAGTGTGCCGCC
GTCTCCTCATCACCAAGCCCAACGCTAGGGTTTTGCTGGCCACCGCCGCCGCCATCCGCC
TCTCCTCCTCGCGAGCATCTACGGTCACCGCCACCGCCACCGCTACCGCTACCGTCGGCC
CTCCGATGGAGGTGCCGTCGGATTGGACGGCCGCCCGGGTCCGGGAGGTTTTCATCGACT
TCTTCAAGTCCAAGTCGCACACGCCATGGCCGTCGAGCCCCGTGGTACCCGTCGACGACC
CCACGCTCTTGTTCGCCAACGCCGGGATGAACCAGTTCAAGCCCGTATTCCTCGGCACCG
CCTCCCCGGACTCACAGCTTGGCCGCCTGAGCCGCGCCTGCAACACCCAGAAGTGCATCC
GCGCCGGCGGCAAGCACAACGACCTTGACGACGTGGGGAAGGACACGTACCACCACACCT
TTTTCGAGATGCTCGGGAACTGGTCCTTCGGAGACTACTTCAAGGAGGGGGCCATCGGGT
ATGCATGGGAGCTCCTCACCCAGGTCTACAAATTGCCCACTGATAGAATTTATGCAACAT
ACTTTGGTGGTGATGAGAAAGCTGGTCTCGCTCCCGACACTGAGTCGAAAAACATATGGT
TGAAGTATCTACCAAATGAAAGAGTTCTGCCTTTCGGTTGCAAGGATAACTTTTGGGAGA
TGGGCGACACAGGTCCTTGTGGGCCATGCACAGAGATCCATTTTGATCGTATTGGCAACC
GTGACGCAGCTTCATTAGTGAATAATGATGACCCTACATGTATTGAGATATGGAATCTTG
TGTTTATTCAGTTCAACAGGGAATCAGATGGTTCTTTGAGATCCTTGCCAGCAAAACACG
TTGACACTGGAATGGGCTTTGAGCGTTTAACCTCTATCCTTCAGAATAAAATGAGCAATT
ACGATACAGATGTATTCATGCCATTATTTGATGCCATCCACCAGCTGGCAGGTGTTGGAA
TTCAACCATACTCTGGTAAAGTGGGATCCGATGATGTTGGGAAAGTTGATATGGCATATA
GGGTTGTTGCAGATCACATAAGAACCCTGTCTTTTGCTATTGCTGATGGTTCTCAACCTG
GAAATGAGGGAAGAGAGTATGTTCTAAGGCGTATACTTAGACGTGCTGTTCATTTTGGTC
ATCAAAAATTGATGGCAAAGCAAGGATTTTTTAGCTCCCTTGTAGATGTGTTTGTCCGAG
TGATGGGTGATGTGTTTCCTGAGCTGAAAGACAATGAAAAGAAGATTAAAGATATAATTA
AAGACGAAGAGGCAAGCTTTGAGAACACTATAGCGAAGGGGTATGAGAGATTTAAGAAAG
CTGCAGATGCTGTCAAGGAGAATGGCGGGGCAGTACTTAGTGGCCAGGATGCATTTGTTC
TGTGGGACACCTATGGTTATCCAATTGATTTGACTGAGGTCATGGCAGTTGACTTCGGGC
TATCTGTTGACATGGAGGGTTTTAATGCTTCTATGGAAGAAGCAAGGCAAAAGGCTAGGA
ATGCTCGCTACAAGGCCGGTGGTAAATCTATTGTCCTGGATGCTAATGCTACATCGGAGT
TGCGCAATCAGGGACTTGCCAGCACAAATGATAGCCCAAAATTCCAACACGAGGTACATA
GCAGTGTGGTGAAAGCTATCTATACTGGCTCAGAGTTCATAGCCACTGCATCTGGTGATG
AAGACTTCGGTCTGGTTTTGGAAAGTACAAGCTTCTATGCAGAACAGGGTGGTCAGATCT
ATGACACTGGGAGTATCGAGGGGCCATCTGGATCTTTCACTGTGAATAATGTCCAAGTGT
TTGCTGGCTATGTCTTGCATATCGGTTCATTTCTGGAAGGGCCGGACTCCAAGGCATTGT
CTGTTGGCGATGAAGTGAAATGCAAGGTTGATTACACACGGCGTACTCTCATTTCTCCAA
ACCACACATGTACCCATATGCTGAACTTTGCTCTAAAGGAAGTACTTGGTGACCATGTTG
ACCAGAAAGGTTCCATTGTTCTTCCAGAGAAGCTGAGATTTGATTTCTCCCATGGGAAAC
CTGTTCAGCCCGAAGATTTGAGAAAAATCGAGTATATAGTGAACAAACAAATAAAGGATG
AGCTGGAGGTATCTGCACAAGAAATAAAATTAGCTGACGCAAAGCGCATAAATGGTCTGC
GAGCTGTGTTTGGTGAAATCTACCCTGATCCTGTAAGAGTTGTATCGATTGGTTGCAAAG
TGGAAGATCTGCTTGCAAACCCTGAAAGCAAAGAATGGTTATCCATATCAACTGAGCTGT
GTGGAGGTACACACATTTCAAACACTAGAGATGCTGCAGCATTTGCCCTCATATCTGAAG
AGGGTATCGCGAAAGGTGTTCGGAGGATAACGGCTGTTACTGCTGAGTGTGCCTCCCAGG
CTATGAAGCTGGCATCATCTATTGATACTGATATCAATGAAGCATCTAAACTGGACGGAG
CAACATTGGAGAAGAAAATTGGGTCCATCAAGAATACACTGGATGCGGCTGCTATCCCGG
CTGCAAGAAAAGCTGATCTAAGAGGCAATATCTCAAAGCTGGAGGATCAACTTAGGAAGG
CGAAGAAGAAAATGGGCGAAGAAAATATCCAAAAGGCTGTCAAGACTGTCATAGATGCTG
CAGAAGCTACTCTTTCCGAAGGAAAACCCTTCTGTGTTGCTCATGTCGACGTGGGTCTTG
ATACCACTGCTGTCCGGGAAGCAGTTGTCAAAGCCATGAACCGTTTTAAGAGTTTGCCGA
TAATGGTATTCAGCACAGATGAGGCATCAAACAAGGCTGTTATATATGCCGGCGTACCTC
CGGATGCACCCAATGGCTTCAAGGTGTTGGATTGGCTTACACCTTCAATCGCACCACTCA
AGGGAAGAGGAGGCGGCGGCAAGAATGGTCTTGCCCAGGGCCAGGGAAGTGATGCTTCTC
GGGTCAAGGAGGCAATGGAGCTTGCTACCCAGATAGCTTCGATGAAGCTGAGCTGATTTG
TTGAGACTGGTCTTCATACATATTAAGTGGCTGCTTGATGGTCGTTCTCACCTTACTTTC
ACAAATTGTGATGCGTGAACATAAAATTATTCACGAAAATCAACTGGAAGCCGTGTCCAT
TTTCACACTACAGGATGTTGTTTAAAGTTCACAGTTGTCGTGTAATTACAGTTTGGTTTA
TCAAATGGAGTGTTATATTTGACGAACGAATGTAATAATAGTACAGACTTATTTTGGAAA
AAAAAAAAAAAAAACTTCTCCTAGTGCAAAAAAAAAAAAAACTGCTGCATGCATGGTTCA
AAAAAAAAAAAAAAAAA

Homology of Contig U35_14566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g10244.1	1000	protein\|alanyl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi3g22760.1	999
Arabidopsis v10	AT1G50200.1	1003	\| Symbols: ALATS, ACD \| Alanyl-tRNA synthetase \| chr1:18591429-18598311 REVERSE LENGTH=1003