barSeed - Barley Seed Development Database

Probe CUST_6691_PI390587928

Source Contig U35_14567

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6691_PI390587928	Hv_44K_v2	CTTAGACGTGCTGTTCACTTTGGTCATCAAAAATTGATGGCAAAGCAAGGATTTTTTAGC	1141	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250641.1	3366	2e-24	1143 - 1202	100	60 / 60	plus	ABC03738 ABC03741
MLOC	MLOC_75685.2	2956	2e-24	2152 - 2211	100	60 / 60	minus	ABC03738 ABC03741
MLOC	MLOC_75685.1	3010	2e-24	2204 - 2263	100	60 / 60	minus	ABC03738 ABC03741
MLOC	AK365338	3269	7e-23	1148 - 1207	98	59 / 60	plus	ABC03738 ABC03741
MLOC	AK252546.1	3442	7e-23	1137 - 1196	98	59 / 60	plus	ABC03738 ABC03741
MLOC	MLOC_11776.1	1619	7e-23	167 - 226	98	59 / 60	minus	ABC03738
JLOC1	JLOC1_50492.2	3026	8e-25	748 - 807	100	60 / 60	plus
JLOC1	JLOC1_50492.1	2600	8e-25	322 - 381	100	60 / 60	plus
JLOC1	JLOC1_7840.2	1588	4e-23	1202 - 1261	98	59 / 60	plus
JLOC1	JLOC1_7840.1	707	4e-23	321 - 380	98	59 / 60	plus
Harvest21	ABC03739	755	3e-25	695 - 754	100	60 / 60	plus
Harvest21	ABC03738	3305	1e-23	1116 - 1175	98	59 / 60	plus	ABC03738
Harvest35	U35_14567	1204	3e-25	1142 - 1201	100	60 / 60	plus
Harvest35	U35_14566	3377	1e-23	1176 - 1235	98	59 / 60	plus

Contig Sequence (1204 bp)

>U35_14567 1204 Hv_44K_v2
GTACTGTATGTTGCATCTGGCCCTCACAGCGCGCCGCCTGCTCCTCACCACCAAGTCAAA
GCCAAGAGCTAGGGATAGGGTTCTGCCAGCCGCCGCCGCCGCCGCCATCCACCTCTCGTC
CCACCGGCCATCCACTGCCGGCCCTCCGATGGAGGAGGCGGCGCCGGACTGGCCGTCCGC
CCTGGTCCGGCAGGTCTTCATCGACTTCTTCAGGTCCAGGGCGCACACGCCGTGGCCGTC
GAGCCCCGTGGTGCCCTTCGAGGACCCCACGCTCCTGTTCGCCAACGCCGGTATGAACCA
GTACAAGCCGGTCTTCCTCGGCGCCGCCGACCCGGACTCGCCGCTCGGCCGCCTGCGCCG
TGCCTGCAACACCCAGAAGTGCATCCGCGCCGGAGGCAAGCACAACGACCTCGACGACGT
CGGCAAGGACACATACCACCACACCTTCTTCGAGATGCTCGGCAACTGGTCCTTCGGGGA
CTACTTCAAGGACCAGGCCATCGCATACGCATGGGAGCTCCTCACACAGGTCTACAAATT
GCCCACTGATAGGATTTATGCGACATACTTTGGTGGCGATGACAAGGCTGGTCTCGCCCC
CGACACAGAGTCCAAAGACATATGGTTGAAGTATCTACCCACTGAAAGGGTTCTGCCTTT
CGGTTGCAAGGACAACTTTTGGGAGATGGGCGACACAGGTCCTTGTGGCCCATGCACAGA
GATTCATTTTGATCGTATTGGCAACCGTGACGCAGCTTCACTAGTCAATAATGATGACCC
TACATGTATTGAGATATGGAATCTTGTCTTTATTCAGTTCAACAGGGAAGCAGACGGTAC
TTTGAGATCCTTGCCAGCAAAACACGTTGACACTGGAATGGGCTTCGAGCGTTTAACGTC
TATCCTTCAGAACAAAATGAGCAATTACGATACAGATGTATTCATGCCATTATTTGATGC
CATCCACAAGCTGGCAGGCGCTGGAATTCAACCATACTCTGGTAAAGTAGGATCCGATGA
TGTTGGGAAAGTTGATATGGCATATAGGGTTGTTGCAGATCACATAAGAACCCTTTCTTT
TGCTATCGCTGATGGTTCTCGACCTGGAAATGATGGAAGAGAGTATGTTCTAAGGCGTAT
ACTTAGACGTGCTGTTCACTTTGGTCATCAAAAATTGATGGCAAAGCAAGGATTTTTTAG
CTCC

Homology of Contig U35_14567 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g10244.1	1000	protein\|alanyl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi3g22760.1	999
Arabidopsis v10	AT1G50200.1	1003	\| Symbols: ALATS, ACD \| Alanyl-tRNA synthetase \| chr1:18591429-18598311 REVERSE LENGTH=1003