barSeed - Barley Seed Development Database

Probe CUST_6687_PI390587928

Source Contig U35_14569

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6687_PI390587928	Hv_44K_v2	TGTTGTAAGCCTCTGCTGCACTTATACAAGTGACATGTAACCTGGCCATTTTGTATCTGC	376	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.036	1.390	1.623	1.234	0.632	0.750
Raw	4957.003	10519.923	10566.633	12485.820	2254.857	2948.893

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250641.1	3366	2e-24	3264 - 3323	100	60 / 60	plus	ABC03738 ABC03741
Harvest35	U35_14569	523	3e-25	377 - 436	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_14569 523 Hv_44K_v2
GCCTTCAATCGCACCACTCAAGGGGAAAGGGGGCGGCGGCAAGAATGGCCTCGCCCAGGG
CCAGGGAAGTGATGCTTCTCGGGTCAAGGAGGCCATGGAGCTTGCTACACAGATAGCTTC
AATGAAGCTGAGCTGATTTGTTGAGACTCGTCTGGTCTCTTGATAAGTGTGCTTTTAGAA
CCTGAAGTGTCAAGTGTTTGCTTGGGAAGCAGGGTGGATGCATCATTCCCTATCCCTGGC
AGCGAAGACAGCAACCTAGAGGTAAATCGGCTCTGAAGTTGTGGACATATCGTCGAGGAG
CAAGGTATGGCACTCGGCGGCCCTCACGGCTAGGTTTGTTTGTTTGTTGTTGTTGTTAGG
GTGCTTGTGAGGCTATTGTTGTAAGCCTCTGCTGCACTTATACAAGTGACATGTAACCTG
GCCATTTTGTATCTGCTTTCCCATTCATATCTTAATAAAAAGATGGGTTATGATGGATGA
AAAAAAAAAAAAAAAAAGCNCACATGTGCTCGAGCTGCAGGTC

Homology of Contig U35_14569 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None