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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_6674_PI390587928Hv_44K_v2ATGGGGCTACAATATCTGTATCCTTTATACTGCTTGTGCTATTTTTTAGCTTTGTCATCT162GeneList: skyblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.7321.3272.5082.6061.2371.285
Raw 5.55111.18426.05732.3616.0737.598



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC264836843e-25163 - 22210060 / 60plus
Harvest35U35_265466843e-25163 - 22210060 / 60plus



Contig Sequence (684 bp)

>U35_26546 684 Hv_44K_v2
GCGCGAGGATTTAGTGGTTTACTACTATTATTTGTAAATGATTTCTTAGCCGCAATGGGA
GGCAAACGCACTTACCAAATACGTAGTATGATGAAGTTTGCTACTGAAATGTCATTGGTA
ATGAATACTCTTCAACATTGCAGACGAAGGCTCACTCTGGTCATGGGGCTACAATATCTG
TATCCTTTATACTGCTTGTGCTATTTTTTAGCTTTGTCATCTCCAAATAACTCTAGTACT
AATATCTTCGCCATCATCGACTATTTTACTTTCTTGACTATCTAACGGACGGTCAGCTTG
GCTATGGGGAAGAGAATTCCCTTTCTCCATGTTTGGTTGACGGTTTTCAAGATTTGGGCT
CTCCTGAAACACTGCAGGATGAAGCACAAGACACGCTTGCACGGACTCCTTTGAAGTTGT
CTTCCGTGAAAGCTGGGGGCATGATGTCGTTTGCCATAGACAGTCTTGGGGCCCTGTGGA
TGTGGGGAAATTGCCCCCAGCAGACTGATGATGGGGAGTTCTACATAGCAGCTACCTCAG
CCCCACTGCCTGTGTGGGATTTCCATGGTCACACTGTAGTGAAGGTTGCCTGCGGTAATG
AACATGTCGTGGCTGCTGTTAGCGCTGGAGAGACATATACAGGAGGTGACCTTGTCTGTT
ATTCCTGGGGCAACAACAACCATG



Homology of Contig U35_26546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g52630.15585e-75protein|regulator of chromosome condensation, putative, expressed
Brachypodium v1_2Bradi2g48650.15691e-80
Arabidopsis v10None