barSeed - Barley Seed Development Database

Probe CUST_6671_PI390587928

Source Contig U35_38522

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6671_PI390587928	Hv_44K_v2	ACAAGAATCATACAGGATGATGCACTTTGCAAATGGAGACAAATGCTGGAATGGCCCTGA	278	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357129	2410	2e-23	1679 - 1736	100	58 / 58	plus	ABC12141 ABC12142
MLOC	MLOC_20753.1	2278	2e-23	1761 - 1818	100	58 / 58	plus	ABC12141 ABC12142
JLOC1	JLOC1_14386.1	1328	1e-23	585 - 642	100	58 / 58	plus
Harvest21	ABC12141	716	4e-24	127 - 184	100	58 / 58	plus	ABC12141
Harvest21	ABC12142	721	1e-23	1 - 57	100	57 / 57	plus	ABC12142
Harvest35	U35_38522	596	3e-25	279 - 338	100	60 / 60	plus
Harvest35	U35_18779	1028	4e-24	307 - 364	100	58 / 58	plus

Contig Sequence (596 bp)

>U35_38522 596 Hv_44K_v2
GTCAGGACAAACATCATGGCTAGACAAGATTCAGAAAACTGTACAGAATGTTCTACAAAA
ATTCAACTTTTTCAAGACCCCTGTTGATTTATCAGAGGCTGCTCATGTTCGGAAGGAGTA
TGATGATGCCAGCTCAAAGCTGTCCAAAATTCAGTCTAGGATAACCTCTCTGACAGATAA
GCTAAAGCAAGACTTTGGTAAGGAAAAGGAGTTCTATTACTTCTATGACCAGTGCTTTGA
GGGCAAGGAGGGCAAGTATGTTTACAAGGTCTGTCCATACAAGAATCATACAGGATGATG
CACTTTGCAAATGGAGACAAATGCTGGAATGGCCCTGACCGAAGCCTAAAGGTGAGGCTT
AGATGTGGGCTAAGCAACGAGCTTAATGGTGTCGATGAGCCCAGCAGATGCGAGTATGTC
GCTGTACTGTCAACTCCTGCAATGTGCATTGAAGAGAAGCTGAAGGAGCTGCAACAGAAA
CTCGACGCTGCGTCTTCAGAACTGTCTGGCCATGACGAGCTCTAAACTGTCACGAGGAAA
CATTGACTCCACTATTACAACCATATAACCATAAGAAAGGCTACAGAGATGCATGC

Homology of Contig U35_38522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16970.1	615	2e-79	protein\|glucosidase II beta subunit-like domain containing protein, expressed
Brachypodium v1_2	Bradi2g10540.1	617	4e-89
Arabidopsis v10	AT5G56360.1	647	8e-61	\| Symbols: PSL4 \| calmodulin-binding protein \| chr5:22823586-22827950 REVERSE LENGTH=647