barSeed - Barley Seed Development Database

Probe CUST_6669_PI390587928

Source Contig U35_38525

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6669_PI390587928	Hv_44K_v2	AGACTGAGTGAAGATAAGGTTAGGCAATGTGTTGACTCAAGACTTGGAGGGGACTATCCT	473	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56925.3	1783	2e-24	1039 - 1098	100	60 / 60	plus	ABC05016 ABC05017 ABC47546
MLOC	MLOC_56925.4	1492	2e-24	515 - 574	100	60 / 60	plus	ABC05016 ABC05017 ABC47546
MLOC	MLOC_56925.2	4276	2e-24	3226 - 3285	100	60 / 60	plus	ABC05016 ABC05017 ABC47546
MLOC	MLOC_56925.1	1610	2e-24	1123 - 1182	100	60 / 60	plus	ABC05016 ABC05017 ABC09756 ABC47546
JLOC1	JLOC1_36843.4	1883	8e-25	1122 - 1181	100	60 / 60	plus
JLOC1	JLOC1_36843.3	1879	8e-25	1118 - 1177	100	60 / 60	plus
JLOC1	JLOC1_36843.2	2264	8e-25	1118 - 1177	100	60 / 60	plus
JLOC1	JLOC1_36843.1	2268	8e-25	1122 - 1181	100	60 / 60	plus
Harvest21	ABC34707	656	3e-25	164 - 223	100	60 / 60	plus
Harvest21	ABC05017	673	3e-25	359 - 418	100	60 / 60	minus	ABC05017
Harvest21	ABC05016	1559	3e-25	1000 - 1059	100	60 / 60	plus	ABC05016
Harvest35	U35_38785	656	3e-25	164 - 223	100	60 / 60	plus
Harvest35	U35_38525	722	3e-25	474 - 533	100	60 / 60	plus
Harvest35	U35_1807	1559	3e-25	1000 - 1059	100	60 / 60	plus

Contig Sequence (722 bp)

>U35_38525 722 Hv_44K_v2
GAAATGTTGTTGAGTTACTTGGTTACTGTCTTGATGGCAACACCCGTGTCCTAGCTTATG
AGTTTGCCACTATGGGCTCTCTTCATGATATGCTTCATGGAAGGATACAACGGGTGAAGA
TAGCTGTTGGTGCAGCGAAAGGCCTAGAGTATCTTCATGAGAAAGCACAGCCTCACGTCA
TACACAGGGACATCAAGTCCAGCAATGTTCTTCTCTTTGATGAAGATGTAGCTAAAATAG
CTGACTTCGATTTGTCAAACCAAGCTCCTGACATGGCAGCCCGGCTTCACTCAACTAGGG
TTCTGGGAACATTTGGATACCATGCACCTGAGTATGCAATGACTGGTCAACTTAGCTCTA
AGAGTGATGTGTACAGTTTTGGAGTTGTTCTTCTGGAGCTATTGACTGGGAGGAAACCTG
TCGACCATACATTACCGAGGGGGCAGCAGAGCCTTGTCACATGGGCCACCCCAAGACTGA
GTGAAGATAAGGTTAGGCAATGTGTTGACTCAAGACTTGGAGGGGACTATCCTCCTAAGG
CTGTTGCAAAGTTTGCAGCTGTTGCGGCATTGTGCGTCCAATACGAAGCTGACTTCCGGC
CAAACATGAGCATCGTCGTCAAGGCGCTCCAGCCCTTGCTGAACGCGCGAGCAGCCCATC
CCGGNGCTGAACATGCTGGGCGCTAAGCTCCAGTCGGACCTTTTGTATGATATAATAGTT
AA

Homology of Contig U35_38525 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g04520.1	362	7e-139	protein\|protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g36980.1	362	4e-140
Arabidopsis v10	AT3G62220.1	361	6e-128	Protein kinase superfamily protein \| chr3:23029276-23030864 REVERSE LENGTH=361