barSeed - Barley Seed Development Database

Probe CUST_6665_PI390587928

Source Contig U35_14570

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6665_PI390587928	Hv_44K_v2	GCAGTTTGATCCTACAGTACCGTTGATTAAGTTACTATGTGACGTACTTTTATCATATGA	1308	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.087	1.438	1.341	1.076	0.430	0.335
Raw	2688.267	5681.723	4543.640	5679.743	799.760	681.676

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369347	1401	2e-24	1321 - 1380	100	60 / 60	plus	ABC00631
MLOC	AK360491	1467	2e-24	1285 - 1344	100	60 / 60	plus	ABC00631
Harvest21	ABC00631	1373	3e-25	1276 - 1335	100	60 / 60	plus	ABC00631
Harvest35	U35_14570	1466	3e-25	1309 - 1368	100	60 / 60	plus

Contig Sequence (1466 bp)

>U35_14570 1466 Hv_44K_v2
CCACCCATCCCCACTCTCAGATCTCGGAAGGAAAGAATGGCCGACTCCTCCACCACGCCG
CACTCCAACGGCGGCACCGTCGCCGTCGCCGAGGAGGAGGAGACCCCCACCGTGCCCCGC
TCTCCGGCGCCGCCGCGGAAGGTGGCGCTGGTGACGGGCATCACGGGGCAGGACGGGAGC
TACCTGACGGAGCTGCTCCTGTCCAAGGGGTACGAGGTGCACGGCCTCATCCGCCGCTCC
TCCAACTTCAACACCCAGCGCCTCGACCACATCTACCACGACCCGCACGCCACCCCCTCC
GCCGCCCGCCCGCCGATGCGCCTCCACTACGCCGACCTCTCCGACTCCTCCTCCCTCCGC
CGCGCGCTCGACCACGTCCTCCCCGACGAGGTCTACAACCTCGCCGCCCAGTCCCACGTC
GCCGTCTCCTTCGAGGTCCCCGACTACACCGCCGACGTCACCGCCACCGGCGCGCTCCGC
CTCCTCGAGGCCGTCCGCCTCTCCGCCAAGCCCATGCGCTACTACCAGGCCGGGTCCTCC
GAGATGTTCGGCTCCACGCCGCCGCCGCAGAGCGAGGCCACGCCCTTCCACCCGCGGTCA
CCCTACGCCGCCGCCAAGGTCGCCGCGCACTGGTACACCGTCAACTACCGCGAGGCCTAC
GGCATCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAGTCCCCACGCCGCGGCGAGAAC
TTCGTCACCCGCAAGATCACCCGCGCCATCGGCCGCATCAAGGTCGGGCTCCAGACCAAG
GTCTTCCTCGGCAACCTCTCCGCCGCCAGGGATTGGGGCTTCGCCGGGGATTACGTCGAG
GCCATGTGGCTCATGCTCCAGCAGGACAAGCCTGATGACTATGTTGTCGCCACCGAGGAG
TGCCACACCGTGGAGGAGTTCTTGCAGGCTGCCTTTGGGTACGCCGGCCTCAACTGGAAG
GATCATGTGGTCATCGACAAGAAGTACTTTCGCCCTTCCGAGGTGGACTGCCTTCAGGGA
GATTCATCCAAGTCGAGGAGAGTGCTTGGGTGGAAGCCCAAGGTTGGCTTCCAGCAGCTG
GTTGAGATGATGGTTGATAACGACATTGAGCTCGCCAAGAAGGAGAAGGTCCTTGTGGAT
GCTGGGTACCGCGACCCCAAGCAGCAGCCATAGAGTCGGTATCGATAGTTTGATTAAAAT
GGAGCCTGGTTTGGATTTGCCCCCCTAGAAGCTGATACAGTGTGGCCATTGCAGTAGAAG
TTGGCTCAAGTTATTGTTGTTTGTCTCAGGGTAGAAATAAGGAGGTTTGCAGTTTGATCC
TACAGTACCGTTGATTAAGTTACTATGTGACGTACTTTTATCATATGAATGAATCAGTCA
GTTGATACCAAAAAAAAAAAAAAAAAACTCTTATGTGCTCGATTATGATAGCAAACTTGT
CTTTTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14570 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g04620.1	376	protein\|GDP-mannose 4,6 dehydratase 2, putative, expressed
Brachypodium v1_2	Bradi1g51460.1	378
Arabidopsis v10	AT3G51160.1	373	\| Symbols: MUR1, MUR_1, GMD2 \| NAD(P)-binding Rossmann-fold superfamily protein \| chr3:19007232-19008353 REVERSE LENGTH=373