barSeed - Barley Seed Development Database

Probe CUST_6644_PI390587928

Source Contig U35_760

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6644_PI390587928	Hv_44K_v2	GGCACTACTATGCTTTGTAGGAACTTGCAAAAATGCCCGTTGCAATAAGAGATATTAGAT	1462	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.614	5.295	1.592	0.698	0.901	0.802
Raw	51.996	68.363	16.764	11.148	3.445	3.425

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58510.2	6169	2e-24	206 - 265	100	60 / 60	minus	ABC04426
JLOC1	JLOC1_38023.1	5347	8e-25	5053 - 5112	100	60 / 60	plus
Harvest35	U35_760	1547	3e-25	1463 - 1522	100	60 / 60	plus

Contig Sequence (1547 bp)

>U35_760 1547 Hv_44K_v2
TCAGATCGGCACCAGCTGCAGAGGTGTGCCCGTCTTATACATGACAGCATCTAGTTGACA
CCAGGAAGCCACACTCCGGCAGCTGCAGCCAGTTTACACTGCAGGTAGAGGCAGGCTAGC
TAAGATCCATGGCGTCGAGCAGGGCGATCTTGGTCATGGGCCTCCTTGCCGCCGTGCTGG
CCCCCGCCTTTTCAACGCGGTCGTTTATCTCCATGCCAGCCGACGCGAGCAGTCCTGTGA
CCCTCGCCGACGGCCTCTCCTACGACTACCACGCGAACTCCTGCCCGCAGCTGCAAGACA
TCGTGTGGCCGATCGTGGAGAGCGCGGTCCTGGGCGAGGTCGCCATCGCCGCCGGCCTCC
TCCGTATCTTCTTCCACGACTGCTTTCCTCAGGGCTGCGACGCGTCCGTCCTTTTGACGG
GACCTAACAGCGAGCGGGACCTGCCGCCGAACCAGACGCTGCAGCCGCGTGCGATGCAGC
TCATCGAGGACGTCCGCGTCAAGGTACACGCCGCCTGCGGCGCCACCGTCTCCTGCGCCG
ACATCATCGCCCTCGCCACCCGTGACGCCGTCTTCGTGGCCGGGGAAAGCGAAATGTTCT
ACTTCTACGACCTGCCGCTCGGCCGGTTTGACAGCCTCGAGCCGGCTAATAGCAGCGCCG
TCTTCGACCTCCCGCAGCCCACCGCGGACGCCGACACGCTCATCAATGCATTCAAGAGCC
GCAACCTCGAGCCCATGGACCTCGTCGCGCTCTCTGGCGCGCACACCGTCGGGAAGGCGC
ACTGCAGCTCCTTCAACAACCGTTTCTCCGAGGACGCCGACTTCGCCCGGAGGCTCGCCG
CCAACTGCTCCAACGACCCGAACCGGCTGCAGGACCTCGACGTGGAAACCCCCATCGTGT
TCGACAACAGGTACTTCAGAAACCTGATGGAGGGAAAGGGGGTGTTCACCTCCGACCAAG
TGCTCATCAGTGACGGCCGCACCGACTGGGCGGTCAAAGGCCTCGCCGAGAACAAATGGT
GGTTCTACGGCCAGTTCCGTGACTCCATGGTGAAGCTTAGTCAGTACCAACCCGGAGGAA
ACGTAGGGGAGATTCGCCGCAACAGCTGCTTCGCGCCTAACGGACGGAGCATTCCAGCCA
CCGCCGGTCACGAGGGGTTCGCAGCCTCTGCTTGAGTTCATTGCTCACTACCTAGAAATT
GGATCTTTTGCCCACTTTACCTCCTAATTTGATAATTTGCCCTCTTCCTGAGACTGTCAG
GTGGGACCGGGGTCATTGGTCATTGAGATAACACTGGGGCAAATCATCCAACCCTTTGTA
AAGTGGGACAAATCATTCAATCCCCCTTCACTACCAGATCGTCATTTTGTTTCCTTGTAG
TAAGAGTAAGCAGTGTGTACTCTGCTTCGTTCAGTCCTCTTTCATGATGTCTCGGAACAC
GTTTGAAATAAGGAATTCGCATGGCACTACTATGCTTTGTAGGAACTTGCAAAAATGCCC
GTTGCAATAAGAGATATTAGATATTGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59160.1	349	9e-152	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g27200.1	325	6e-98
Arabidopsis v10	AT1G71695.1	358	1e-61	Peroxidase superfamily protein \| chr1:26964359-26966557 FORWARD LENGTH=358