barSeed - Barley Seed Development Database

Probe CUST_6641_PI390587928

Source Contig U35_16608

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6641_PI390587928	Hv_44K_v2	ATGAAACTCCATTCAATTTGTACTTGGCTCAGACCTCAGAGCCGCAGTGCTAGACTTAAA	1181	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.781	2.271	0.965	0.822	0.298	0.407
Raw	70.573	92.391	34.634	48.736	5.251	8.701

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17000.1	1050	6e-24	78 - 136	100	59 / 59	minus	ABC06664
JLOC1	JLOC1_11745.1	1030	3e-24	28 - 86	100	59 / 59	minus
Harvest21	ABC06664	1255	3e-25	1182 - 1241	100	60 / 60	plus	ABC06664
Harvest35	U35_16608	1255	3e-25	1182 - 1241	100	60 / 60	plus

Contig Sequence (1255 bp)

>U35_16608 1255 Hv_44K_v2
TTTCTCCATAGCAGCCGACGCTGGGGATGCCCGAGCCCCACCAAATCCACCAACCCCCGC
CCCCAACCGATCCAAACCCTGTTGCCTCCACGGCTGCAAATGCCCGGCGCAATCCGGTAC
CATTTCTTGCCATTCTCCGTGCGGAAGGAACGAGACAAGTTCTTCCTCTGATTTCTTGCT
TGTCTTCTTCCTTGTTGTTGAGGCCCCGTTGCCGCTGCCGTTGCCGGAGATTGCGGTGCC
GCCGGTGCAGCCGAAGATGATCATAAAGGGGATGCTGGGCCGGTACGAGCGGTGGAACCC
TGTGCACCCGACGGCGGGCGCCTTCTGGGGCGTCGGGCTGGGGTTCGGCTGCGGCGTCGG
GTGGGGCCCGGGGTTTGGACCCGAGGTCATCGGCTACGTCGGCGCCGGATGCGGCGTCGG
ATTCAGCGTCGGCATCACGCTCGCCGGTGTCGGCGTCGGGCTGCCACAGCACGGCATCAT
CAAGAACCACTACCACGGCGGCGGTTTTGCAAACAATGTCCCATTCGAATCAGCAAGGTT
TTATACCTTGACCTTGCTAAGAGGTATGCTATGGGATGCCATCAATTATGTGAGCAACGC
CGCAGCTATGAGGAAAGAATCTCGGCAGAAGCTTTTAAGATGTCAGGAGAAACCTCAAGT
TTCAGGAGGAGTTGATCTGCCCAAGCTGGGGAAAGGCATGTCCAGCAGCTTCCGATCGAC
GATGGAGTGTATCAAGGCCTTCACAAACCAGAATTGGCCTCCATAGCAGCCCCTAAGTAA
ATTGAAGATTGCAACCGAGCTTTGTGTGCAAACTACCCACCTGGGATCATAGCCTGGATA
GTAGTACCCCTTTCCGGGTGGCAATGGGGTATCGGATGCAGGTGGCTCGTATCTCGTCCA
CGACAGGGTTAACGTCCCTTCTAAAGGAAAAAAATAAGAACCTGTACTTTGTGAGTAAGA
ACCCCCATGGCACACATAGATACATTATACATATTTCTTCGGAATTAGTTTTTGGCATGA
GCAAGTTTAATTTTTTACAGTTATAAGGGAAACAACTCCAGCTGAAGAACATGTTAGCTT
GTAATCTTGCTAGTGATTTTTGTTGAATAATCACCCAGTCGATGTGTAACTATAACAATA
TGCTGTTCATCCAAGCTCGTTGCAAAATCTTGTATTGTGAAATGAAACTCCATTCAATTT
GTACTTGGCTCAGACCTCAGAGCCGCAGTGCTAGACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16608 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g05040.1	240	4e-78	protein\|cadmium-induced protein, putative, expressed
Brachypodium v1_2	Bradi1g58240.1	223	1e-83
Arabidopsis v10	None