barSeed - Barley Seed Development Database

Probe CUST_6628_PI390587928

Source Contig U35_16610

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6628_PI390587928	Hv_44K_v2	TACTGGTCCTTGCTAAATGATCATGTTTATGTAATCTGGAGTAAATGTTTATGCGTCATG	818	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.321	1.343	1.362	0.937	0.434	0.228
Raw	47.148	74.585	70.171	78.909	12.378	6.764

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15537.2	1726	2e-24	1586 - 1645	100	60 / 60	plus	ABC05874
MLOC	MLOC_15537.1	1136	7e-23	1080 - 1136	100	57 / 57	plus	ABC05874
JLOC1	JLOC1_10665.2	1197	8e-25	1022 - 1081	100	60 / 60	plus
JLOC1	JLOC1_10665.1	1671	8e-25	1496 - 1555	100	60 / 60	plus
Harvest21	ABC05875	922	3e-25	828 - 887	100	60 / 60	plus
Harvest21	ABC05874	716	3e-25	23 - 82	100	60 / 60	minus	ABC05874
Harvest35	U35_16610	913	3e-25	819 - 878	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_16610 913 Hv_44K_v2
GGTATATTTCTCTTTATTTTGAGATGGCAGATGAGTATGATCGCAGCTACGGAAGGTCAG
TCACAAACAGTGACGAAGGCGGGTACAACAAGACCAGCAAGGAAGACTATGGCCGCAGCA
GCGATGATACCGGCGGCTTCAACAAATCCAGCAACGACAACAATGATGGTGGGTATAAGA
GCACCAACACGGATGACTACAGTAGCAGTGGCGGCTACGACAAGTCCAGCACAGACAGTT
TAGCTGGCGGCTTGACCAAATCTAGCACCGATGACTACAATGGCAGTGGCAGTTACAACA
AAACTGGTGCCGAAGACTACAGTGCCAGTGGCGACTACAAGTCCAGCACTGACGATTTCA
GTGGCGGCCACAACAAGACTAGCACCGATGGCTACGGCAGCGGATACAAGGACTCCAGTA
CCGACGACCACAAGTCGAGCTCCGACGACTATGATGGTGGCTACAAGAACTCCAGCGCCG
ATGCCGGCTATGGCGAAGGTGGTTACAACAAATCAAGCACCGAGGACTCCCAAGCCTACA
TGAAATCAAGCACCGAGGACTCCCAGGCCTACAACAAATCAAGCACCGAGGACTACAGCA
GTGGTAAGAATACCTCCAACACTGATGACTATGACAGCAGTGGCTACAACAAGCCCAGCA
CTGGTGACGACAATGGCCGCAGTGGTGGCTACAACGAGTCCGGCGCCGACGGGTATGCCA
CTGGAGCAGGCAAGACCGGCTCTGATGATTACTAGACAAAATCGTCGCGAAAGCGAGTGT
GTTTGCGGTGCTAAATATGTACGTGTGGTTGCTACTGCTACTGGTCCTTGCTAAATGATC
ATGTTTATGTAATCTGGAGTAAATGTTTATGCGTCATGTTTATAAAAAAAAATTATAAAA
AAAAAAAAAAAAA

Homology of Contig U35_16610 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g10040.1	245	1e-83
Arabidopsis v10	None