barSeed - Barley Seed Development Database

Probe CUST_6626_PI390587928

Source Contig U35_16611

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6626_PI390587928	Hv_44K_v2	ATATTTCAGCATCCTTTTGGCTAGTTTTCATGGAATTGCTGGTATCGTATTGCCAAAAAA	1387	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.488	1.394	1.217	0.930	0.334	0.383
Raw	2416.517	3561.782	2705.587	3248.424	409.445	510.678

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61417.1	3161	3e-22	4 - 59	100	56 / 56	minus	ABC05452
MLOC	MLOC_61417.2	2798	3e-22	2 - 57	100	56 / 56	minus	ABC05452
MLOC	MLOC_61417.3	3166	3e-22	2 - 57	100	56 / 56	minus	ABC05452
JLOC1	JLOC1_40135.4	3156	1e-22	3079 - 3134	100	56 / 56	plus
JLOC1	JLOC1_40135.3	3204	1e-22	3127 - 3182	100	56 / 56	plus
JLOC1	JLOC1_40135.2	2836	1e-22	2759 - 2814	100	56 / 56	plus
JLOC1	JLOC1_40135.1	2788	1e-22	2711 - 2766	100	56 / 56	plus
Harvest21	ABC05452	1458	3e-25	1388 - 1447	100	60 / 60	plus	ABC05452
Harvest35	U35_16611	1458	3e-25	1388 - 1447	100	60 / 60	plus

Contig Sequence (1458 bp)

>U35_16611 1458 Hv_44K_v2
GGGCAACCTAACATCTTTAGGTGAAATGATGAGTGAGTTCCCCTTAGACCCACAGATGTC
AAAGATGCTTGTCATCAGTCCAAGGTACAACTGTTCAAATGAGATCCTCTCAATATCTGC
CATGCTATCAGGTATGTCAACTAACAATTTCTCTCTCTGAATTCCATTTCTACAACTACA
TTATCATGTTGTTATATGTTGCACATGCACTGTTTTGCTTGCACCAGTGTGTGCAAGCAA
GTTGCCATGGTTCTAGCATACAGACTAGTGCATGTGCAGTTCCAACATTTTCTCTTGTTT
GTATATTGTGTATTGTCATCAGCAACTGTCATGCACCTGGCTTCTAGAGCTATTGATCGA
AATGATCATACAGTTTAGGCTGATGCAGATAGTTGCTGTATGTTGAGTTATTCTGACAAA
GCAAATGGTATCGTCTCGCCTCTTTGCATCTGCTGACCAACCATGGGCTTCGTCTGTTAT
TACCATATCCTTTGTCTAGTACCCAATTGCTTTCTCCGGCCTAGGGAGGCACAAAAGGCT
GCTGATGAGGCGAAGGCTCGATTTGGGCACATCGACGGGGATCATCTCACACTTCTGAAT
GTGTACCATGCATACAAGCAAAACAATGAGGATCCTACATGGTGTTATGAGAATTTTGTC
AATGCCCGGGCGATGAAGTCTGCTGATAATGTTAGACAACAACTTGTCCGCATCATGACC
AGATTCAACCTCAAGATGTGCAGTACAGACTTCAACAGTCGTGAGTACTATGTCAATATC
AGGAAAGCAATGCTTTCGGGGTACTTTATGCAGGTTGCTCATTTGGAGCGAACTGGGCAT
TACTTGACCGTTAAGGATAATCAGGTTGTCCATCTTCATCCCTCGAATTGTATGGACCAT
AAGCCGGAGTGGGTCATCTACAATGAATATGTTCTGACCACCAGGAATTTCATCCGTACA
GTCACCGATATCCGTGGAGAGTGGCTGATCGATATAGCTCCACAGTACTATGATCTGACC
AATTTCCCGTCATGTGAGGCCAAGCGTGTCCTGGAGAGGCTGCACAATAAGAGGGAGAGG
GAAAGAGCTGCTAGTAGGAACTGAATTAATGTCATTCTTCTGGTCCCTTGGAATTTGGGC
AGCGCTGCCAAAGGCTTTGGTCATCACTGTTGACCTCCACCATTGTCATGATATCTTCCA
TGTCGTAGTTTTCCAGTTTTGTGGATGGTGAAAGCACTATATACAACATATGTCAAATGC
TCCCCAGCTACTGCATTACGAAATAGATGCTTGTTTTCCCTCTGTTTTAGAAGGTGTAGG
TTATCATACATTAATTATGTATCGGTCTCCATATTTTTGGTGTATCAAAAGCTGTTGTTT
ACTTTGTATATTTCAGCATCCTTTTGGCTAGTTTTCATGGAATTGCTGGTATCGTATTGC
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_16611 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19960.1	723	3e-133	protein\|ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g64190.1	720	9e-139
Arabidopsis v10	AT2G47250.1	729	1e-126	RNA helicase family protein \| chr2:19399923-19402981 REVERSE LENGTH=729