barSeed - Barley Seed Development Database

Probe CUST_6624_PI390587928

Source Contig U35_16612

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6624_PI390587928	Hv_44K_v2	TGATTTAGTGCATTTTGACTTCATGGATCCTCCTGCACCTGAAACTCTACTGAGGGCCTT	1405	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61417.1	3161	7e-23	1483 - 1542	98	59 / 60	minus	ABC05452
MLOC	MLOC_61417.4	2745	7e-23	1105 - 1164	98	59 / 60	minus	ABC05452
MLOC	MLOC_61417.2	2798	7e-23	1113 - 1172	98	59 / 60	minus	ABC05452
MLOC	MLOC_61417.3	3166	7e-23	1481 - 1540	98	59 / 60	minus	ABC05452
JLOC1	JLOC1_40135.4	3156	4e-23	1596 - 1655	98	59 / 60	plus
JLOC1	JLOC1_40135.3	3204	4e-23	1644 - 1703	98	59 / 60	plus
JLOC1	JLOC1_40135.2	2836	4e-23	1644 - 1703	98	59 / 60	plus
JLOC1	JLOC1_40135.1	2788	4e-23	1596 - 1655	98	59 / 60	plus
Harvest21	ABC05453	1537	3e-25	1406 - 1465	100	60 / 60	plus
Harvest35	U35_16612	1537	3e-25	1406 - 1465	100	60 / 60	plus

Contig Sequence (1537 bp)

>U35_16612 1537 Hv_44K_v2
ACGAGGCCCCACCCCGTCCCCTCTCCCGCCTATTCCTCCTCCGCACACCAGCGACCTCCC
TCGCCGCCGCCATGGGGACGGAGCGGAAGCGCAAGGTAAGCCTCTTCGACGTGGTTGACA
AGACCTCCGTATCCTCCAAGCTCGGCCGCGCCGGCATCAATGGTGCCGCCGCCGCCGCCG
CGGCCAATCCGTCCATCAACCGGTGGAACGGCCGGCCCTACTCGGCGCGGTACCTGGAGA
TCCTCGAGAAGCGCCGCACGCTCCCCGTGTGGCAGCAGAAAGACGAGTTCCTCCGCGTTC
TCCGCGACAACCAGACCCTCATCCTTGTCGGAGAAACCGGAAGTGGCAAGACCACTCAGA
TCCCCCAATTTGTGCTTGAGGCTGAAGGTTTGAGCAACCGCTCTATGGTTGCCTGCACCC
AGCCACGGAGGGTTGCTGCAATGTCGGTCTCTCGGCGTGTCGCGGAGGAGATGGATGTCA
CAATCGGGGAGGAAGTTGGTTACAGTATCCGATTCGAAGATTGCAGCAGTCACAAAACTG
TTCTCAAATATTTGACAGATGGTATGCTTCTGAGAGAAGCAATGGCAGACCCACTTTTAG
AAAGGTACAAGGTGATTGTTCTTGACGAGGCTCATGAGCGCACGTTGGCAACAGATGTTC
TGTTTGGGCTTCTGAAAGAAGTTCTAAAGAACAGGCCTGACTTGAAGCTTGTTGTTATGA
GTGCTACTCTTGAGGCAGAGAAGTTTCAGGGTTATTTCAGTGGGGCACCATTGATGAAGG
TTCCTGGTAGACTTCATCCGGTTGAGATCTTCTATACCCAGGAACCAGAAAGGGACTATC
TAGAAGCCGCTATCAGGACAGTTGTGCAGATACATATGTGTGAACCTGCTGGTGATATCC
TTGTATTCCTCACTGGAGAAGAGGAGATTGAGGATGCATGTCGAAAAATAAACAAGGAAG
TTAATAACATGGGTGATCAGGTTGGCCCAGTTAAAGTCGTGCCATTGTACTCTACTCTCC
CCCCTGCAATGCAGCAGAAGATTTTTGACCCTGCCCCACCTCCATTGAAAGAGGGAGGCC
CTGCTGGAAGGAAAATTGTTGTGTCCACAAACATTGCCGAGACATCCTTAACCATTGATG
GTATAGTGTATGTTATAGATCCAGGGTTTTCCAAACAGAAGGTTTACAATCCAAGGATAA
GGGTGGAATCCCTTTTGGTGTCTCCAATTTCCAAGGCAAGTGCGCATCAAAGAGCTGGTC
GTGCTGGAAGAACGCAGCCTGGGAAGTGCTTCAGGTTGTACACAGAGAAGAGTTTTAATG
GTGATTTACAGCCGCAGACCTACCCAGAAATCCTTCGGTCAAACCTCGCAAACACAGTTC
TTACTCTGAAGAAGCTTGGAATTGATGATTTAGTGCATTTTGACTTCATGGATCCTCCTG
CACCTGAAACTCTACTGAGGGCCTTGGAAGTTCTGAACTATNTGGGGGCACTCGACGATG
AAGGCAACCTAACATCTTTAGGTGAAATGATGAGTGA

Homology of Contig U35_16612 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g19960.2	565	protein\|ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g64190.1	720
Arabidopsis v10	AT3G62310.1	726	RNA helicase family protein \| chr3:23057516-23060561 REVERSE LENGTH=726