- Probe CUST_6619_PI390587928
- Source Contig U35_30908
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6619_PI390587928 | Hv_44K_v2 | GGATTTTTGGAACCTATGTGCAGGCTTCAGCCGATTAAGTAAAAAACAATTAAAAGTAGT | 469 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.678 | 1.512 | 4.002 | 2.281 | 0.446 | 0.632 |
| Raw | 34.665 | 121.477 | 287.089 | 262.976 | 17.712 | 26.335 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_3864.2 | 1642 | 8e-25 | 1449 - 1508 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3864.1 | 1125 | 8e-25 | 932 - 991 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31028 | 572 | 3e-25 | 470 - 529 | 100 | 60 / 60 | plus | ABC31028 |
| Harvest35 | U35_30908 | 572 | 3e-25 | 470 - 529 | 100 | 60 / 60 | plus |
Contig Sequence (572 bp)
>U35_30908 572 Hv_44K_v2 CCGCGACGTGGGCGCCGGCTTCAGGTGCATCCGCATGGTGAACAACATCTACCTCAACTT CGACGCTCTCCACGGCGACAAGGAGCACGGCGGCGTGCGCGACGGCACCTCCCTCGTGCT GTGGAAGTGGTGCGAGGGAGACAACCAGCGCTGGAAGATCCTCCCCTGGTAAACGTGTCA TGCTGCTGAAGCTGCATTGATCGCCACCGGGACACGGAGTTGGTAGAGATCAGCCTGTGA TCTGTTGCCGTGTCGGTAGAATAAAAGTCGTGTGCGGTCGGTGGTGGTGATGCGTCCGTG AGTTTGTGTGTTTAGTTTCTGTCCTGTCGTTGTGTCCTGCTAATGCGAGTGTAAGCATTT GGCACCTGTGCTTGTTTTTCAGACCATGGATCCGTGATGAGAACCTCTGTACCGTGGCGT CATCCTTGCCTCTATGCGAATGGTATTTACTGTCTATCTACATCGGTGCGGATTTTTGGA ACCTATGTGCAGGCTTCAGCCGATTAAGTAAAAAACAATTAAAAGTAGTAAAAAGAATCA GAAAATGTGAAACTTTTATCAAAAAAAAAAAA
Homology of Contig U35_30908 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |