- Probe CUST_6614_PI390587928
- Source Contig U35_16617
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6614_PI390587928 | Hv_44K_v2 | GAGTAGTACTGATGCTACTCAGGTCTTTGTATGGCTGGATAATGTACTAATGAATAAGAT | 468 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.014 | 0.020 | 0.139 | 6.419 | 26.087 | 70.969 |
| Raw | 8.144 | 23.451 | 154.224 | 11607.303 | 15213.700 | 46322.700 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_80223.1 | 1226 | 2e-24 | 646 - 705 | 100 | 60 / 60 | plus | ABC05455 |
| JLOC1 | JLOC1_53421.1 | 1455 | 8e-25 | 886 - 945 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05456 | 555 | 3e-25 | 469 - 528 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05455 | 553 | 1e-23 | 467 - 526 | 98 | 59 / 60 | plus | ABC05455 |
| Harvest35 | U35_16617 | 555 | 3e-25 | 469 - 528 | 100 | 60 / 60 | plus |
Contig Sequence (555 bp)
>U35_16617 555 Hv_44K_v2 ACCGTACGTACAAAAAAATCATAACTTAACCAGAGGATAGTGGTCAACTAGCCAGCCATG TCGTCCACAAAGATATGCATTACCACCATCATTGTCATAGTGTTGCTGCTTCAAGGCACC GTTGATGCCGGCTTTAGGCTGGGGAGTGGTTTTTGTCAAAGCGATCATGGCTTGGTGGAT TGCCAAGCCATGGCGACGAGCACAAGGAAGTATGGTAACAAGGAATCATGGCCGAATGTG TGGCCAGAGTGGTTCGCAAAGTGCCCACAAGGAAAAAGCTTCTGGTGCATCAAGAGATGG TGTGGGTGTATCTAGCATGCGTGTACAATCCATATACATATAGCAATAAGGGCCGTGTAG GCCAGAATAAACTTCATGCAAAAAAGGTAAGGTTCATATATACATAAAGGTGTGCCACTT AGTCTAAATTCGTATGCATAGAATGCATGTTGTTTGTGGCGATCACAAGAGTAGTACTGA TGCTACTCAGGTCTTTGTATGGCTGGATAATGTACTAATGAATAAGATAATTGTTTTGAA AAAAAAAAAAAAAAA
Homology of Contig U35_16617 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |