barSeed - Barley Seed Development Database

Probe CUST_6609_PI390587928

Source Contig U35_775

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6609_PI390587928	Hv_44K_v2	TGTTTGTGCCTCTGCACCAAGCTGGTTTTCCTCACTGATATGGATTCTATTCTTTGTGAG	982	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.578	0.659	0.933	1.728	1.287	1.703
Raw	1814.913	3278.751	4014.703	11952.073	3063.187	4416.353

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365973	1191	2e-23	900 - 957	100	58 / 58	plus	ABC10790
MLOC	MLOC_11113.1	631	2e-23	506 - 563	100	58 / 58	plus	ABC10790
JLOC1	JLOC1_7323.1	867	1e-23	513 - 570	100	58 / 58	plus
Harvest21	ABC10790	962	4e-24	868 - 925	100	58 / 58	plus	ABC10790
Harvest35	U35_775	1340	3e-25	983 - 1042	100	60 / 60	plus

Contig Sequence (1340 bp)

>U35_775 1340 Hv_44K_v2
CCCANCGGAAACCCTAGTTTTGCCCTCCCATCGCCTTCTCCCACAGAAAACGATCCTCCG
AAGCTTCCCAGGCTCGACGTGCTCACTGCCACCGGCGACAAGACGGGCGTCTCCAAGCCC
AGGTCGGAGGTGCACCCGGGACGGGGGGGACCACCGCGCGGTGCACGTGTGAATCTACTG
CGAGAGCACCGGGGAGCTGCTACTGCAGCGCCGCGCCGACTGCAAGGACTCGTGGCCCGG
CCAGTGGGACATCTCCAGCGTCGGCCACGTCTCCGCATGGGACTCCTCCCTCTCCTCCGC
GCGTACACGACGGTCAAGCCCTTGGCCGACAGAGTGCTTCTCAAGACCAAGACTGCCGAG
CAGAAGACGACCGGTGGGATTTTGCTCCCTTCAACTGCGCAGTCTAAACCTCAGAGTGGT
GAGGTGGTTGCTGTTGGAGAGGGAAGAACCATTGGGGATAGCAAAGTAGAAGTTGGCATT
AAGGTTGGGGCTCAGGTTGTATATTCGAAGTATGCTGGAATGGAGGTGGAGTTGAATGAT
TCCAACCATCTGATCCTAAAAGAGGACGATATAATAGGTATTCTGGAGACAGAGGATGTG
AAAGACATGAAGCCTCTTAGCGACCGTGTTCTTATCGAGGTAGCTGTAGCTGAAGATAAA
ACTGCCGGGGGCCTGCTGCTGACTAACAGTGTCCAGGAGAAGCCGTCTGTTGGAACGGTG
GTCGCTGTCGGCCCGGGCCATCTGGATGAGGAAGGCAAGAGGATCCCGTTGCCGGTATCC
ACTGGCAGTTCCGTCCTGTACTCCAAGTATGCTGGTGCCGAGTTTAAGGGTGTCGATGGC
ACAAACTACATCGTGTTGAGGGTACCTGACCTGATGGCTATCCTCTCTTGAGCTGGATTG
TAGCGCAAGGCGCGGTTTTCCTGATCATAAATTTTCCAAAGGCAACTTAAACTAGATGAA
GAGAAATGAGAATCCCCTTCAATGTTTGTGCCTCTGCACCAAGCTGGTTTTCCTCACTGA
TATGGATTCTATTCTTTGTGAGCGGTACCACAGGGGCCACCTCATCGTCAACTACGAGTT
CGTCAACTGCGGCGACAACCACGTCGAGTTCCATGGAAAGAACGAGACGCTACCAGCCAG
CACTCATGCCGTTGAGTAATTCAAATCTATAATAGTAACACATGCATGATGATCAGATGC
TGCATTGTTGCGCTGTACGCAACACATGTACGCATGCATGGCACGAAAGTGGAATAAATC
AAACGGGAAGTGTAATAAATTTCATGTATGGATCTTATGATTGTAACGACGGCCGGGAAG
TGGAATAAATTCCAGAAGTT

Homology of Contig U35_775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54060.1	256	9e-108	protein\|chaperonin, putative, expressed
Brachypodium v1_2	Bradi3g60027.1	254	3e-111
Arabidopsis v10	AT5G20720.1	253	5e-98	\| Symbols: CPN20, CPN10, CHCPN10, ATCPN21, CPN21 \| chaperonin 20 \| chr5:7015015-7016354 FORWARD LENGTH=253