barSeed - Barley Seed Development Database

Probe CUST_6606_PI390587928

Source Contig U35_778

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6606_PI390587928	Hv_44K_v2	TGTGCTGCTCAGAAACTCAAGGAAGGGAGAGATTTATAGATCATCCTATCCTACAAAAAA	623	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.459	2.650	1.377	0.910	0.601	0.507
Raw	20.159	55.595	24.299	24.339	4.852	3.762

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360230	1818	9e-22	1758 - 1812	100	55 / 55	plus	ABC02996 ABC02997 ABC14547
MLOC	MLOC_20198.1	1822	9e-22	91 - 145	100	55 / 55	minus	ABC02996 ABC02997 ABC14547
JLOC1	JLOC1_14008.1	1855	5e-22	1609 - 1663	100	55 / 55	plus
Harvest21	ABC02997	456	2e-22	70 - 124	100	55 / 55	minus	ABC02997
Harvest35	U35_778	747	3e-25	624 - 683	100	60 / 60	plus

Contig Sequence (747 bp)

>U35_778 747 Hv_44K_v2
ACGAGCCCTACTGGCTCATCGACTTCGCCAACGTCTGCATCGTCGTGCACCTGGTCGGCG
CATACCAGGTGTTCTGCCAGCCCATCTTCGCCGCCGTGGAGAACTTCGCCGCCGCGACCT
GGCCCAACGCCGGGTTCATCACCCGGGAGCACCGCGTCGCCGCCGGCAAGCGGCTCGGGT
TCAACCTCAACCTCTTCAGGCTGACGTGGAGGACGGCGTTCGTGATGGTGAGCACGCTGC
TCGCCATCCTCATGCCCTTCTTCAACGACATCCTCGGCTTCCTGGGCGCCATCGGGTTCT
GGCCGCTCACCGTCTACTTCCCCGTGGAGATGTACATCCGGCAGCGGGGGATACAGAGGT
ACACGACGAGGTGGGTGGCGCTGCAGACGCTCAGCTTCCTCTGCTTCCTGGTGTCGCTCG
CCGCGGCGGTGGCGTCCATCGAGGGCGTCACGGAGTCGCTCAAGAACTACGTCCCGTTCA
AGACCAAGTCGTGAGGATGGGAGTTTTCGCATCTTGTGGAATAATTGGTCGCCAACAATG
CTTGTTTTTGTTCATGTGTGATGATGAGAAACCATCGTCGGCTGGGTGCGTCGGTGGGGG
GTTTATCCCGTGTTACGCCGGGCTGTGCTGCTCAGAAACTCAAGGAAGGGAGAGATTTAT
AGATCATCCTATCCTACAAAAAAAAAAAAAAAAACCTCGCTAATTTATGTACAGAAACTT
GAGTTCACACAAAAAAAAAAAAAAAAA

Homology of Contig U35_778 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g36180.1	488	8e-91	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi1g37990.1	493	6e-100
Arabidopsis v10	AT1G44100.1	480	5e-63	\| Symbols: AAP5 \| amino acid permease 5 \| chr1:16764651-16767223 REVERSE LENGTH=480