barSeed - Barley Seed Development Database

Probe CUST_6605_PI390587928

Source Contig U35_779

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6605_PI390587928	Hv_44K_v2	GTGTGCGTGACGACCGCCGTGGCCATGGCGATGCCATTCTTCGGGTCCGTGGTGGGGCTC	396	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64527.1	2127	2e-24	1523 - 1582	100	60 / 60	plus	ABC02996
JLOC1	JLOC1_42383.1	2176	8e-25	1416 - 1475	100	60 / 60	plus
Harvest21	ABC02998	592	3e-25	397 - 456	100	60 / 60	plus
Harvest35	U35_779	592	3e-25	397 - 456	100	60 / 60	plus

Contig Sequence (592 bp)

>U35_779 592 Hv_44K_v2
CTGCTGCCGCAGGACACGCTGAAGGCGGCGGCGCCGTCGGAGGCGAAGGTGATGAAGAAG
GCGACGGCGGTGAGCGTGGCGGTGACGACGGTGATCTACCTGCTGTGCGGGTGCGTGGGG
TACGCGGCGTTCGGCGACGGGGCGCCGGACAACCTCCTCACCGGCTTCGGCTTCTACGAG
CCCTTCTGGCTGCTGGACGTGGCCAACGCCGCGGTCACCGTCCACCTGGTGGGCACGTAC
CAGGTCATCACCCAGCCCATCTTCGCCTACGTCGAGCTGCGGGCCGCCGCGGCATGGCCG
GACAGCGCGTTCGTCGGCCCGAGGGAGGTCCGGCTGTGGCCCTCGGCCGTCCGCGTGTCC
GTGTGCCCGCTCCGGCTGACCTGGCGCACGGCGTACGTGTGCGTGACGACCGCCGTGGCC
ATGGCGATGCCATTCTTCGGGTCCGTGGTGGGGCTCATCGGCTCCATCTCCTTCTGGCCG
CTCACCGTCTACTTCCCCGTGGAGATGTACATCGCGCAGCGCCGGGTGCCGCGGNGCAGC
ACGCGGTGGCTCTTCCTCCAGGCGCTCAGCGCCGTCTGCCTCCTCGTGTCCC

Homology of Contig U35_779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08130.1	476	2e-81	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi5g14240.1	499	3e-106
Arabidopsis v10	AT5G49630.1	481	2e-67	\| Symbols: AAP6 \| amino acid permease 6 \| chr5:20142681-20146441 REVERSE LENGTH=481