barSeed - Barley Seed Development Database

Probe CUST_6602_PI390587928

Source Contig U35_30912

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6602_PI390587928	Hv_44K_v2	GTTCAGTTGGAATTTGTTGCACCAGTTGAACTTCTTATCTGAACTTCAGTCTCCTCCACC	125	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12066.4	2644	2e-24	61 - 120	100	60 / 60	minus	None
MLOC	MLOC_12066.3	5493	2e-24	237 - 296	100	60 / 60	minus	ABC21293
MLOC	MLOC_12066.5	2550	2e-24	61 - 120	100	60 / 60	minus	None
MLOC	MLOC_12066.1	2693	2e-24	382 - 441	100	60 / 60	minus	None
MLOC	MLOC_12066.2	2693	2e-24	382 - 441	100	60 / 60	minus	None
JLOC1	JLOC1_8064.1	2072	8e-25	1868 - 1927	100	60 / 60	plus
Harvest21	ABC31033	185	3e-25	126 - 185	100	60 / 60	plus
Harvest35	U35_30912	185	3e-25	126 - 185	100	60 / 60	plus

Contig Sequence (185 bp)

>U35_30912 185 Hv_44K_v2
CGACACGATGGGCGCCAACGGGGGCGGGGAGGGGACCTTCGACGAGTTCAAGGGGGGGAT
GCAGAAGGGCAGCGCCCTCCAAGACGTCGTCCTCTCCTCCCTGGGACCCGGACAGCAGTA
GCTCCGTTCAGTTGGAATTTGTTGCACCAGTTGAACTTCTTATCTGAACTTCAGTCTCCT
CCACC

Homology of Contig U35_30912 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None