barSeed - Barley Seed Development Database

Probe CUST_6598_PI390587928

Source Contig U35_16621

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6598_PI390587928	Hv_44K_v2	GCCTGTTTGATTAGTGTTTTGCATGCTGTATCTCCCTTTACATGTATTTTGTGTGTGATT	1698	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354026	5414	2e-24	1599 - 1658	100	60 / 60	plus	ABC02915 ABC02916 ABC11995 ABC11996
Harvest35	U35_16621	1862	3e-25	1699 - 1758	100	60 / 60	plus

Contig Sequence (1862 bp)

>U35_16621 1862 Hv_44K_v2
CAGCCGGCACACCATTATTTCGTAAGCCGTGGGATGTTCTAGGCTCCAAGACCACCCCAT
CGTTTTTGTGTATATAATAGGACCTTGCAGTGTGTAAGAGTAAGAGGAAGCATCGACCAT
CACACATAAGTCACCATGGCTCCCCTTGTGCCATTATTGCTGCTGCTTCTCTTGTCTAGC
TTCTGTAGTACATCGTCGTCTCTCGACCTTGTCCATGGAGCAGCCAGCGTCGAGGAGGAG
CTCAACAACTACGTCGTCGTGGAAACTAGCTCGCTCGAGCCAAGCCCCGTATGCCAAGGC
CACAGGGTGAGCCCACCGGCCAGCAGCAACCTTACCGGCGGCGGCTGGGTGCCGCTGAGC
CGTCCTCATGGCCCATGCTCGTCGGCGGGTGACAGGGCGGCGCCGCCGTCCTCCGTTGCC
GAGACGCTCCGGTGGGACGAGCACCGTGTCAGCTACATCCAAAGGAAGCTCTCGGGCGCG
CCCCTCGAGACACCCCAGTCTGACCAGACGGATACCCAGCCCGCCTCGCCCTTCGGAATT
GGAGGACCAAAGGGGACGTCCGACGTTTCTCCGGCGGCCACCGGCGGCGGGGGGAAGCTG
CCTGGAGTGACCCAACACATGCTGCTCGACACGGCCAGCGACGTGCCGTGGGTACAGTGC
GCGCCCTGCCCACAGCCGCAGTGCTACCGACAGACGGACGTCACCTACGACCCAAGCAAG
TCCGGCACCTATGCCCCCTTCCCCTGCAGCTCCCCGGTCTGCCGCCAGCTCGGACCCTAC
GCCAATGGCTGCACCGGCGCAGGCAACACCGGCCAGTGCCAGTACCGCGTCCAGTACCCC
GACGGATCATCCACCTCCGGCACCTACATCTCCGACGTGCTCACCATCAACCCCACCCCC
GCCGGCACCGTCGGCAGCTTCCGCTTCGGGTGCAGCCACGCCGTGCAGCGCCCCGACCTC
TTCAGCAACACCACCGCCGGAATCATGTCTCTCGGCCGGGGCGCGCAGTCGCTGTCATCC
CAGACAAAGGGAACCTACGGCAACGCCTTCTCCTACTGCGTCCCGCCGACGACGAGCCAC
AACGGCTTCTTCATCCTCGGCGTGCCGAGAATCGACGCCTCTAGATACCTGCTCACGCCC
ATGCTCAAGAGCAAGATGGCCCCCTCGCTCTACCTCGTCCGCCTGCAGGCCATCATCGTC
GCGGGTCAGCCGCTCGCCGTGCCACCGATGGTCTTCGCCGCCGGCGCCGTGATGGACTCC
CGCACCGTCATCACGCGCCTCCAGCCAACGGCGTACCGTGCTCTGCGCGCCGCGTTCAGG
GCCCAGATGGGCGCGTACCGCGTCGCCCCATCCACGGGCCAGCTGGACACCTGCTACGAC
TTCACCGGCGTCCAAAACGTGAGGCTGCCAAAGATCTCGCTTGTGTTCTACAGCCGGAGC
AACGGCGGCGCTGCCGTGGAGCTTGACCCGTCGGGGGTGCTGTTCAACAGCTGCCTCGCG
TTCGCCTCCACCGGCGGCGGCGACGGTTCCACCGGTATCATCGGCCACGTCCAGCAGCGG
ACCATCGAGGTGCTATACAACGTCGGCGGCAGCGCCGTCGGGTTCCGCCGTCGCGCGTGC
TGAGCAGCTATCAGTCTATCACCGTTTGAGCTCTTGGGGCATGTCTATAGGGCCTTTAAC
CTATGCCCGATAAAATAAGCCTGTTTGATTAGTGTTTTGCATGCTGTATCTCCCTTTACA
TGTATTTTGTGTGTGATTTATCGATTGTAAAAGCTTATTGTATGAAATGATGCTTAAGAT
CTATTTTTCTATTTTGACGAGGAAATCAAAAGTTTATTGTGTGAAAAAAAAAAAAAAAAG
GC

Homology of Contig U35_16621 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02780.1	495	2e-155	protein\|aspartic protease, putative, expressed
Brachypodium v1_2	Bradi1g50760.1	507	0.0
Arabidopsis v10	AT5G10770.1	474	2e-61	Eukaryotic aspartyl protease family protein \| chr5:3403331-3405331 REVERSE LENGTH=474