barSeed - Barley Seed Development Database

Probe CUST_6594_PI390587928

Source Contig U35_16623

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6594_PI390587928	Hv_44K_v2	AATTGTGATTCCTCCCTTTGAGTCAACCTTGGACGTGTTAATTTATCTACTCTATCTCGT	648	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.076	0.407	1.433	1.734	1.008	1.003
Raw	57.491	492.240	1494.160	2788.924	572.447	625.174

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44084.1	1152	3e-21	1087 - 1143	98	57 / 58	plus	ABC05629 ABC39039
JLOC1	JLOC1_28537.1	1003	2e-21	908 - 964	98	57 / 58	plus
Harvest21	ABC05629	708	3e-25	649 - 708	100	60 / 60	plus	ABC05629
Harvest35	U35_16623	708	3e-25	649 - 708	100	60 / 60	plus

Contig Sequence (708 bp)

>U35_16623 708 Hv_44K_v2
CTGCTTCCCTGCCAGTTCATTACTCTTCTCCTCGCTCCCCATTTTGAATCGATAGAGATC
AGAGGTATTGTGGTGCAGCTAGCTAGGGCTAGGAGCGAGCAAGCAAGCAGATCCAGGAGG
AGGGGAGCGGAGATGGCGGACTGGGGGCCGGTGGTGATCGCGACGGTGCTGTTCGTGCTG
CTGACGCCGGGCCTGCTGTTCCAGCTGCCGGCGCAGGGCCGGATCGTGGCCTTCGGCAGC
ATGCACACCGGCGGCCTCGCCATCCTCGTCCACGCCGTCATCTACTTCGCCCTCATCACC
ATCTTCCTCATCGCCATCGGGGTCCACATCTACGCCGGCTGAAGAACCCCCCCGCTCTTC
TTCGCCGCACATCGCTTCTCAGCTCCTTGGTCCGCCATGCGCATGAAGCTGTGTTGGCCG
CTATTTACCGTTTGTATTGGAGTACTGTGTAGTGAGTACCTACCTTGTATTGTCTTCTTC
GTTTAGGTGAGGTGACCAAGAGAGACAAATATGGTTTGTTGTTTACCTGGGATTTCGTTT
GAGATTGCTGGCTGGCTGGCTGCCGTGCACTCTCTGTCTCTGCCTCTGTCTCTGGGATGA
AAATTTATGCAGGATGGATGTTGTTGTTGCTGCAAAAAAAAAAAAAAAAATTGTGATTCC
TCCCTTTGAGTCAACCTTGGACGTGTTAATTTATCTACTCTATCTCGT

Homology of Contig U35_16623 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None