barSeed - Barley Seed Development Database

Probe CUST_6592_PI390587928

Source Contig U35_16624

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6592_PI390587928	Hv_44K_v2	TTTGCGTTCGAGTTGTTCAGGTGTTGGTTCAGTATATCCGATTGCACTTCAACGAGGAAA	549	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.141	0.260	0.937	1.653	1.208	1.256
Raw	298.261	856.416	2715.317	7248.127	1925.540	2179.283

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1954.1	883	6e-24	656 - 714	100	59 / 59	plus	ABC05630 ABC42970
JLOC1	JLOC1_1187.1	812	3e-24	667 - 725	100	59 / 59	plus
Harvest21	ABC05630	600	3e-25	527 - 586	100	60 / 60	plus	ABC05630
Harvest35	U35_16624	623	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_16624 623 Hv_44K_v2
GGGGACTGCACACACACACACATCCCGGAGAGTTCCCAAAGAATCCAGAAGCTCGCACAA
GATTTGGGGTTTTTAGATAGATCGGAGGGGAGAGGGGAGATGGCGGACTGGGGTCCGGTG
ATTGTCGCGACGGTGCTGTTCGTGCTACTGACGCCGGGGCTGCTGTGCACGCTGCCGGGG
CGCGGGCGGGTGGCGGAGTTCGGTAGCATGCACACCAGCGGCCTCTCCATCCTCATCCAC
GCCGTCCTCTACTTCGCGCTCGTCACCATCTTCATCATCGCCGTCGGCGTCCACGTCTAC
ACCGGCTAGCCGAGCGCGCCCGCCGCCAGCATCGATCGGTCCGAGCTCCTCCGCTGGATT
TAGTTCAAGATCTGTCCGTCTGCAGAGCTATCGGCTAATGGTTGTGGGGTCTTGTAATCC
GATTTGGTGGTATGTTCTTAAATTTTCGTTGTAACCGGTGTTAAAGATCGATGCTCCATA
CGGCATGTTGCGTTATACTCGTATATACGGTCGATTGAAAATTCGAGTACGATTCAATTG
GTCGTTTGTTTTGCGTTCGAGTTGTTCAGGTGTTGGTTCAGTATATCCGATTGCACTTCA
ACGAGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_16624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None