barSeed - Barley Seed Development Database

Probe CUST_6591_PI390587928

Source Contig U35_16625

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6591_PI390587928	Hv_44K_v2	AGACAGATATGGTTTGTTGTTTACCTTGGATTTCGTTTGAGATTGCTGGCTGGCTGGCTG	457	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.032	0.278	1.101	1.291	1.009	1.188
Raw	320.597	4537.265	15239.767	27305.700	7537.103	9814.427

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44084.1	1152	2e-24	948 - 1007	100	60 / 60	plus	ABC05629 ABC39039
JLOC1	JLOC1_28537.1	1003	8e-25	769 - 828	100	60 / 60	plus
Harvest21	ABC05631	592	3e-25	458 - 517	100	60 / 60	plus
Harvest21	ABC05629	708	6e-22	503 - 562	97	58 / 60	plus	ABC05629
Harvest35	U35_16625	592	3e-25	458 - 517	100	60 / 60	plus
Harvest35	U35_16623	708	6e-22	503 - 562	97	58 / 60	plus

Contig Sequence (592 bp)

>U35_16625 592 Hv_44K_v2
ATTTTGAATCGACAGAGATCAGAGGTATTGTGGTGCAGCTAGCTAGGGCTAGGAGCGAGC
AAGCAAGCAGATCCAGGAGGAGGGGAGCGGAGATGGCGGACTGGGGGCCGGTGGTGATCG
CGACGGTGCTGTTCGTGCTGCTGACGCCGGGCCTGCTGTTCCAGCTGCCGGCGCAGGGCC
GGATCGTGGCCTTCGGCAGCATGCACACCGGCGGCCTCGCCATCCTCGTCCACGCCGTCA
TCTACTTCGCCCTCATCACCATCTTCCTCATCGCCATCGGGGTCCACATCTACGCCGGCT
GAAGAACCCCCCGCTCTTCTTCGCCAAACATCGCTTCTCCGGCTCCGCCATGCGCATGAA
GCTGTATTTGGCTGATATTTACCGTTTTTATTGTACTGTGTAGTGAGTACTCTACCTACC
TTGTATTGTCTTCTTCGTTTAGGTGAGGTGACCAGAGAGACAGATATGGTTTGTTGTTTA
CCTTGGATTTCGTTTGAGATTGCTGGCTGGCTGGCTGCCGTGCACTCTCTGTCTCTGCCT
CTGTCTCTGGGATGAAAATTTATCCAGGATGGATGTTGTTGTTGCTGCAAAA

Homology of Contig U35_16625 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None