barSeed - Barley Seed Development Database

Probe CUST_6588_PI390587928

Source Contig U35_16626

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6588_PI390587928	Hv_44K_v2	GGTGTTTTTGAGTGGCTACTCTCCACTGTATTCTATACGCGAGATGGTCAGAAAAGGAAA	1023	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.773	1.407	1.150	1.070	0.476	0.685
Raw	162.751	201.004	143.806	198.963	32.779	51.313

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51124.1	2033	2e-24	1967 - 2026	100	60 / 60	plus	ABC05767
JLOC1	JLOC1_32630.1	948	8e-25	869 - 928	100	60 / 60	plus
Harvest21	ABC05767	1121	3e-25	1024 - 1083	100	60 / 60	plus	ABC05767
Harvest35	U35_16626	1121	3e-25	1024 - 1083	100	60 / 60	plus

Contig Sequence (1121 bp)

>U35_16626 1121 Hv_44K_v2
CCATCATCCACGCCGAAAGTCCAAAGCTCCAAAAACCAGACCAAACCAGAACCGGTTGAT
CCGTCAGTAGCCGCGGCCGCCGGCGATGGAGAAGGGCAAGGGTCTCGCCCGACGCTGGGC
AGTGGAGCTCCACGACGTATCTTCCTCCTCCTCCTCGCCTGCCTTCCCCGATCCTCCTGG
CTTCACCAGATCCGCCCCGGAAGCGGACGACGCCGCCAGCGCGCGGCAGCGCAAGGAGAC
CGAAGCTGCCTGGAAGGGGCAGAAAGCCTGGGAGGTGGCGCAGGCGCCCTTCAAGAACCT
GATGATGATGGGTTTTATGATGTGGATGGCCGGGAGCACAGTCCACCTGTTTAGCATTGG
TATCGTCTTCTCTGCTCTCTGGCAGCCCTTCAACGCACTCCGATCTGTCGGGAAAGTTTT
CGAACCATTTAAGGACCCAAGGGTGGATACACTTGCACCTAAGTTACTCTTCACTGCTCT
CAACTTGGCCGCTATGGGTTTGGGTGTTTGGAAGCTCAACACATTGGGTCTTCTTCCGAC
AAATGCATCAGACTGGGTATCTTCACTGTCTCCTGCTCGGGAGGTTGAATATGCTGGTGG
AGGGATCCCCTTGATGTAATGCCCCTTGTGATCTTCAATTGGTCAAACTCTTTGGCTTTA
CTACTTGGAGGATGGTATCTGTACTAAAGTGAAATTTATACCCTGGTGAAGGGAGAAATT
TTATTCGGGTTTGTTGGAGAAATTTTATTCGGGTTTGTTATATTTTTCGTTTCACGTGTA
CCAAATTCGGATTGATATCTATAGCAAATCACAGGCTTAGCTAAACATAGCTTGCTTATT
TTTTTTTTATCTCCTCTGCTTACCATGTCTGATTCAATAGAGAGGTTGTAGCTAACTCTC
CCATTGAATGTAGTAGACGAACTGCTTTTGTTATGTTCTATTAATAGCTGTGAGATTTTT
TGTTCAGTTTCGCTGGTTGAAATTGACATTTGAACTTATGGTTTATTCTGTACGCAAGAA
TGTGGTGTTTTTGAGTGGCTACTCTCCACTGTATTCTATACGCGAGATGGTCAGAAAAGG
AAAAAAAGACCAGTCAACATTCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16626 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g24580.1	179	3e-96	protein\|transmembrane protein 85, putative, expressed
Brachypodium v1_2	Bradi1g61820.2	176	1e-101
Arabidopsis v10	AT5G10780.2	187	1e-66	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 395 Blast hits to 395 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 122; Plants - 51; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). \| chr5:3408422-3409784 FORWARD LENGTH=187