barSeed - Barley Seed Development Database

Probe CUST_6586_PI390587928

Source Contig U35_16627

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6586_PI390587928	Hv_44K_v2	GCGAGAATATTGTAGCCACAGAAGGACAGAACTCGTTCCAAGAAAATTTGACGCCTTACA	1853	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37615.1	2152	7e-23	2086 - 2146	98	60 / 61	plus	ABC07771 ABC07772
JLOC1	JLOC1_24364.2	2100	4e-23	2027 - 2087	98	60 / 61	plus
JLOC1	JLOC1_24364.1	2166	4e-23	2093 - 2153	98	60 / 61	plus
Harvest21	ABC07771	1016	3e-25	957 - 1016	100	60 / 60	plus	ABC07771
Harvest35	U35_16627	1913	3e-25	1854 - 1913	100	60 / 60	plus

Contig Sequence (1913 bp)

>U35_16627 1913 Hv_44K_v2
CCTCCTCCTGCGATTCCACTCGCATCCAGGAGGACAAGGTCCAAGGGGGGATCGGCTCCA
ATCCACTTGATCCCATTTTTCTCTTCGTCGTTGCTTTTGCCGTTTCTTCATTCCTCAGGT
CAAATAGAGCCAGGCTCCCTCTCCCTTCCCTTCCCTTCCCTTCCCTCAAAGCTTCCTGGC
TTCTTGCTTGGGCTCCGGCTGCTGGTACGTTCTTGATTGCCTTGCAAAATGATCAAGTGG
GGGATCAGCAGCGGCACGCCCGCAGATTCCTACTACGAGATCCGCTCGGATTGCACAGAC
GATGTGCCCAAAAGCAAGTTCAAAATCAAGGCTGGCAAAACACTAAGTGTTCGGAAATGG
CAAGCTGCATTTAATCCCGATGGCTGTCTTGACATTGCCTCGGTCCTAAGCCGGATACAA
AAAGGAGGTGTTCATCCGACTGTCAGGGGGGAGGTTTGGGAGTTCTTACTTGGCTGCTTT
GATCCAAGGAGTACCTTTGACGAGAGAGAGGAGATCAGGCAAATAAGAAGGCTACAGTAT
GCTAGATGGAAGGAAGAATGCCGAGAGATGGATTCTCATGTTGGTAGTGGTAAAGTTATC
ACAGCACCACTTATCACTGAGGATGGAAGACCTATTAAAGATCCTTTGGTTTTACTTGAG
GCTACTTCAAACCAAAACACCTCAGACGGTGCTTCAACTAGCAGCAACAATGGAATTGAA
GTAGACGATTCTGCAGAGCGTATTACTGACAAGCAAATTATTGAGTGGAAGCTTACATTA
CATCAAATTGGACTTGACGTGCTACGTACTGACCGCACCATGGTATTTTACGAGAACAAG
GAAAATCTTTCAAAGTTATGGGATATTCTAGCCGTGTATGCATGGATTGACAAAGATGTT
GGTTACTGTCAAGGAATGAGTGATTTATGCTCACCGATGATTGTGCTACTCAATGATGAG
GCAGATGCGTTTTGGTGCTTTGAGAAATTGATGCGTAGATTGCGAGGAAATTTCAGATGC
ACAGATCAATCAGTCGGGGTTGCTAACCAACTTCAGCACCTTGCATCCATTATTCAGGTG
CTGGACCCCAAGCTACATGACCACCTAGAAACGCTTGGTGGAGGTGACTATCTTTTTGCA
TTCCGTATGTTCATGGTTCTATTTCGACGTGAGGTGTCATTTGGGGACTCCTTGTACCTC
TGGGAGATGATGTGGGCTCTGGAATACGATCCCGATATCTTCTTTGCAGCATGTGAAGAA
GCAAGTGGTGCACATAAAAAAGTATCGAAATCAAAATTAAGAGGAGTGCGCCATTTTGCC
AAGTGGGATAAGGATAAGGATAAGGATGTCCCTGAGGAAACTGATGGCCCAGTTCCCATT
TCAGTTTTCATGGTTGCAAGTGTGCTCAAGGAAAAGAGAGAAAAACTGTTACAAGAAGCT
AGAGGACTGGATGATCTTATTAGGATATTGAATGATGTAAACGGGAACTTAGATGCGAAG
AAAGCCTGTGCTGGAGCTCTGAAACTTCACAAGAAATACCTCAAAAAGGTACAGGCAAAG
AAAACCTAAAAATGCATCGGAACATATCCTTCCACTGAGGTGTTCTTTACCATTTGAATC
TACACATACACGGCCATATTTGGCACAGAAACGGCGAGTGAAGGTCCTCACGGGTGGTCA
TCATCGGAAGATGGCCCCGGATACAGGATAGATGCAACCTCTGTATGTAATGATATCACG
TTCTCTGTATCCCACATAAGTTCATATGCTTGTGCAGACATGGTGCTGTGGGTACCTTGC
AAAAATAATAATTTCAATTCAAGTTGAAATGTCAAAAAAAAAAAGGTTCACCGGCGAGAA
TATTGTAGCCACAGAAGGACAGAACTCGTTCCAAGAAAATTTGACGCCTTACA

Homology of Contig U35_16627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g34130.1	452	protein\|TBC domain containing protein, expressed
Brachypodium v1_2	Bradi5g04330.1	448
Arabidopsis v10	AT5G54780.1	432	Ypt/Rab-GAP domain of gyp1p superfamily protein \| chr5:22248696-22251692 REVERSE LENGTH=432