barSeed - Barley Seed Development Database

Probe CUST_6576_PI390587928

Source Contig U35_45463

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6576_PI390587928	Hv_44K_v2	ATGTGTATTGGAGCTTCACAAAGATACCTGTTGTTGATAATCATCCCTTGCATGAAAAAA	32	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44109.1	743	3e-22	100 - 158	98	59 / 60	minus	ABC44386 ABC44387
MLOC	MLOC_44109.2	805	3e-22	100 - 158	98	59 / 60	minus	ABC44386 ABC44387
MLOC	MLOC_44109.3	510	3e-22	73 - 131	98	59 / 60	minus	ABC44386 ABC44387
Harvest21	ABC44387	220	3e-25	33 - 92	100	60 / 60	minus	ABC44387
Harvest21	ABC44386	512	6e-22	421 - 480	97	59 / 61	plus	ABC44386
Harvest35	U35_45463	220	3e-25	33 - 92	100	60 / 60	minus

Contig Sequence (220 bp)

>U35_45463 220 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCAAAAATAAACAATTTTTTTCATGCAAGGGATGATTATCAAC
AACAGGTATCTTTGTGAAGCTCCAATACACATTTTTGACGTTACAACACATTCGCCACCC
CATTACCTCAATGCAATGAACCACGCTGCATGCCAGCTATCAAAGTCGTGAAAATGCATG
ATGGCTTCATGCATGTGTACAAGCTGTCAACCCGGGGAAC

Homology of Contig U35_45463 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None