barSeed - Barley Seed Development Database

Probe CUST_6567_PI390587928

Source Contig U35_45471

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6567_PI390587928	Hv_44K_v2	ACAACAAGGACACAACATATGGTTGACCAATTGACAGAACTCCAGAGAAGGTTGGAGGAG	474	GeneList: yellow MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.230	3.066	1.244	0.777	0.259	0.239
Raw	228.196	362.310	121.961	132.690	13.466	14.230

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC44403	617	3e-25	475 - 534	100	60 / 60	minus
Harvest35	U35_45471	617	3e-25	475 - 534	100	60 / 60	minus

Contig Sequence (617 bp)

>U35_45471 617 Hv_44K_v2
TTTTTTTTTTTTTTTTTATTCGCATACATAAGCCGCTCTAGTAGTAATATAATGTATGAT
CTTTTACACGCAATAACACAATAACGTTGAGCATCAAATACAGGGTTCTGGAATTTTCAT
CACACGAAAGTTGCACGCAAAATAACTGAGAATCTTGACTGGAATAGTCCATCACTCGAA
GTGGTATACATGCATATATGCGGCCGGCCAGGTGCCACGTATATACTTATTTTTCACACT
TTCTTCGCTAGCTGTTTTCAATCAAGGCAACCACGGGGGCATGAAAGTAGTCATGCATGA
GCTATTCAGGGACTCAGGAGGGTACCCTATGTGAAGAGTGGGTTCACCAGCAGCATCAAG
GGGGTGGAAGAATCCATTGCCGCCGTGCATCTGCGGCTGCACTTCCGGCTGACGTTCATA
GCTCAGTACGTTGTTGTTGTGCTCCCAAAGCTGCTGCCCATGAACCTGGTTGCTCTCCTC
CAACCTTCTCTGGAGTTCTGTCAATTGGTCAACCATATGTTGTGTCCTTGTTGTTCTAAT
GTGCTTCAAGGACGAATCGAGTTGCTTCTCAAGGCTCTCAAGCTCTTTTATGCCTAATGA
ATCAAGATCTTCACCAA

Homology of Contig U35_45471 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41950.2	250	8e-60	protein\|OsMADS7 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi3g41260.1	251	1e-72
Arabidopsis v10	None