barSeed - Barley Seed Development Database

Probe CUST_6558_PI390587928

Source Contig U35_45487

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6558_PI390587928	Hv_44K_v2	ATATGATACTGTTGTATCTTGTTCATATGCAAATCCCTTGCTTGGGTTGTTGAAACCAAA	13	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358166	1400	2e-23	1309 - 1366	100	58 / 58	plus	ABC44448
MLOC	MLOC_47254.2	1180	2e-23	1091 - 1148	100	58 / 58	plus	ABC44448
JLOC1	JLOC1_30499.1	1262	1e-23	1152 - 1209	100	58 / 58	plus
Harvest21	ABC44448	634	3e-25	14 - 73	100	60 / 60	minus	ABC44448
Harvest35	U35_45487	634	3e-25	14 - 73	100	60 / 60	minus

Contig Sequence (634 bp)

>U35_45487 634 Hv_44K_v2
TTTTTTTTTTTTTTTTGGTTTCAACAACCCAAGCAAGGGATTTGCATATGAACAAGATAC
AACAGTATCATATACAGGTGATGACTAATCTGGTCCATGGCCAACCAGCTTGCCAATAGT
TGATCAAACCTACCAATTTGATGTACATGTTTACAACATACAGAGATATGTTAATGTCCC
TAGCTTACAAGTATACACTCTGGTAAGAATCGTCATCACTGTGTCTCCAGAGAACCTGCT
CATCGATCTTGGAAAGGTTCTCATCATCTAGCAATTTCCAAGTCTGTATCGACTCGACTC
CCATCCATGATCTGTGCCCTTTCTTGAGTTGAGTATAAATTACCCGAGCTCGCCTCGGCC
AATGAGGTCTTCCATAGGCATGGTAACCAAAGCCGCCACCATAACAAAACCATATCCCGT
TAAGGGTGCCACAGAAATCATTAAGATGATCATGACCAAGAAAGACACCTTTTACATCTC
CCATGGAGACGAGGGTGCCAAGGACACCAGAGTTTACAAACGAGCAAGCCACTCCCTCCT
GATACTCACCCTTAAAATCTGTGTACCACAGCTCTCGGACTTCTGGATTTGGGATGTGGA
AGAATGCTAATGCGGGGGCAGGTGAATTTTGCTG

Homology of Contig U35_45487 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48570.1	382	1e-83	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi1g33990.1	386	4e-87
Arabidopsis v10	AT5G57140.1	397	7e-69	\| Symbols: ATPAP28, PAP28 \| purple acid phosphatase 28 \| chr5:23149926-23151370 FORWARD LENGTH=397