barSeed - Barley Seed Development Database

Probe CUST_6556_PI390587928

Source Contig U35_45490

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6556_PI390587928	Hv_44K_v2	GCTCAAGAATTCTCAAGTTTGAAAGGTTAACAGAGATTTCAGTGGATTTTTCAGTGACTA	8	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13677.1	1335	2e-24	1264 - 1323	100	60 / 60	plus	None
JLOC1	JLOC1_9275.3	1125	3e-24	1067 - 1125	100	59 / 59	plus
JLOC1	JLOC1_9275.2	1493	3e-24	1435 - 1493	100	59 / 59	plus
JLOC1	JLOC1_9275.1	1246	3e-24	1188 - 1246	100	59 / 59	plus
Harvest21	ABC44454	508	3e-25	9 - 68	100	60 / 60	minus
Harvest35	U35_45490	508	3e-25	9 - 68	100	60 / 60	minus

Contig Sequence (508 bp)

>U35_45490 508 Hv_44K_v2
TTTTTTTTTAGTCACTGAAAAATCCACTGAAATCTCTGTTAACCTTTCAAACTTGAGAAT
TCTTGAGCAGGGTCCGAAACAAGAACATAAACACCTCCAGGTGCAGATAAAATTAGCCGC
ATAATATGTTACAGTGATGCATTACTCAACAACAACCATCTCAGATTATGAGATTGCGCA
TACTAAACCTAAATTCCAAGCTAGGCTATGGAAAAATGGGATCACCATCGTGTTACCAGG
GTTCCCAAGCCACAGATGTCAGTCGGCCAAGCTATCGAGGAAGCCCTGCAGCTCCTTCAA
TCCTTCTGCGGATATACTTCTCTGTACGCGGGGCCTGGGGGCTGTCAAGACAGGGGGCGC
TATGGAGTTGAAGCACACGACAACCACGGAAAGGTTGTCGCCGCTCTTCCTCTTGATGGC
CTCGTCGACAAGCTCTTTACAGCAGGCGATTGGGTCGTTGTGCTCTTGGAGCCTCCGGCG
TGCAAAGTCTACCGCATTTTGGCTGCGG

Homology of Contig U35_45490 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None