barSeed - Barley Seed Development Database

Probe CUST_6553_PI390587928

Source Contig U35_45495

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6553_PI390587928	Hv_44K_v2	ATTGCCAACGCTTCGTTGGCTTGGCTAGTTTGGTTGTGATAACTGAAGTTGTTGATCTAT	521	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252922.1	746	2e-24	634 - 693	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_81642.4	672	2e-24	309 - 368	100	60 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC37479 ABC49951
JLOC1	JLOC1_54303.1	499	8e-25	139 - 198	100	60 / 60	minus
Harvest21	ABC44469	581	3e-25	522 - 581	100	60 / 60	plus
Harvest21	ABC01161	733	3e-25	620 - 679	100	60 / 60	plus	ABC01161
Harvest35	U35_45495	581	3e-25	522 - 581	100	60 / 60	plus
Harvest35	U35_14003	737	3e-25	620 - 679	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_45495 581 Hv_44K_v2
CTCCGAGCGAAACACCTCACTCCCTCTCTCCCATCCGAAGCTCCAGCCGCAGCCATGGCC
CCCAAGGCAGACAAGAAGCCGGCCGCCGAGAACAAGGTGGAGAAGGCGGCGGAGAAGACC
CCCGCGGGCAGCAAAGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTG
CTGAAGCAGGTCCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCC
TTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCCCGCTACAAC
AAGAAGCCCACCATCACCTCCAGGGAGATCCAGACATCCGTCCGCCTCGTCCTCCCCGGC
GAGCTCGCCAAGCACGCCGTCTCCGAGGGCACGAAGGCAGTCACCAAGTTCACCTCCTCC
TAGGCTGATGATGCGTCGCCTGCTGTGACAAATGTAGTGGTCGTTGACTCTGCTTATGTA
TCTCCAAGTAGTGGTAGTAGTAGCCGCCTGCGTGCTGGATGATTGCCAACGCTTCGTTGG
CTTGGCTAGTTTGGTTGTGATAACTGAAGTTGTTGATCTAT

Homology of Contig U35_45495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38300.1	151	2e-58	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00510.2	126	1e-59
Arabidopsis v10	AT5G22880.1	145	1e-56	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145