barSeed - Barley Seed Development Database

Probe CUST_654_PI390587928

Source Contig U35_26045

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_654_PI390587928	Hv_44K_v2	GACCAGGCCAGCCGCTGCCGGGCCGAGCTGCGGCGGGACATCGCCGACGCCCAGGCCGAG	397	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59075.1	2614	2e-24	2068 - 2127	100	60 / 60	minus	ABC19772
JLOC1	JLOC1_38416.1	2118	6e-21	1 - 53	100	53 / 53	plus
Harvest21	ABC22814	496	3e-25	398 - 457	100	60 / 60	plus
Harvest35	U35_26045	497	3e-25	398 - 457	100	60 / 60	plus

Contig Sequence (497 bp)

>U35_26045 497 Hv_44K_v2
CGCAATCGTCTCCCTCCCCATTCCCAACCCATTTCGAATCCCGCCGCGCGCCCTCTCCGG
CGACGCCTCCGCCCCCGTCCGCCGGCAGGCCGCGCACCGGTGAGCGAGCTCTCGTATCGC
GGGAGGCGGAAATCCGCGCGCGGCGGAGGCCCTGTAATTAACCAATCCCCCTCGATTCGC
TCCCCACGTACCCGCAGGCCGCGGCGCCCCCGGCGGGACCGGGATGAGCGGCGGACGTCG
CCCCGGCGACCAGCTCCTCCAGATGGGGACGGCGTGCGGCGCCCTCATGCACGAGCTCCA
GGTCATCTGGGACGAGATCGGGGAGAAGGACGCCGCGAGGGACACCATGCTGCTCGAGCT
CCAGCAGGAGTGCCTCGAGGCCTACCGGAGGAAGGTCGACCAGGCCAGCCGCTGCCGGGC
CGAGCTGCGGCGGGACATCGCCGACGCCCAGGCCGAGCTCGCCGCCGTGTGCTCCGCCAT
GGCCGAGTCGCCCGTCC

Homology of Contig U35_26045 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None