barSeed - Barley Seed Development Database

Probe CUST_6542_PI390587928

Source Contig U35_4406

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6542_PI390587928	Hv_44K_v2	GTATTCCCTCAGTTCACAAATAGGAGTATAAGATGTTCTAACTTTTTTCTGCATCAGATG	1232	GeneList: blue MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.360	1.628	0.961	0.818	0.315	0.322
Raw	32.835	61.542	32.804	44.773	4.050	5.148

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_3267.3	1440	8e-25	1284 - 1343	100	60 / 60	plus
JLOC1	JLOC1_3267.2	1564	8e-25	1408 - 1467	100	60 / 60	plus
JLOC1	JLOC1_3267.1	2176	8e-25	2020 - 2079	100	60 / 60	plus
Harvest35	U35_4406	1338	3e-25	1233 - 1292	100	60 / 60	plus

Contig Sequence (1338 bp)

>U35_4406 1338 Hv_44K_v2
GGCTTCACCTCCGTTGGTCGTCTCCCCTGTTTTCCCGTCCCAAACCTCTCCCCTTCCTAA
CGAGACGCGGCGGCCACCTCGAAGCCCGACCCAGGCTTGCTGTCCTATGGAAGAAGGCAG
TGACTATTATGTTGTTAGGAAAGGGGACATGGTTGCCGTTTACAGAAGTTTAAATGATTG
CCAGGCGCAAATTTGCTCTTCGGTATCTGGTCCTGCTGCAAGTGCCTACAAGGGTTACTG
CTGGAGCAAAGAAAAGGCAGAATACTTTTCTTCACATGGACTAAGCAATGCTTCGTATAC
AATCAGTGCAGCTGAACTTAGGGAAGATTTATTGGGTGCCCTTGTGCCCTGCACTTTCCA
GAGTGCCACTGGATCTGGTCAAGCTCAAGGTTACTCAGACCAGGCGCATGCATTTAGCGG
GCTGGAAGCCAAACCAAGGTCCTCCAGTTATTCCTCACCAAATAACCTTAACCACACTGG
AGCTTTTGATGCACAACCTGTCTCAAAACAATATATGGTATGTGTTGTTCACTTTGATGG
TGCTTCAAAAGGAAACCCAGGAAAATCAGGTGCTGGAGCTGTACTGATGACTGAAGACGG
AAGAGTGATATCTCGACTCCGTGAGGGTCTTGGTGTTGCTACCAATAATGTTGCTGAGTA
TCGGGGCCTTATCTTAGGCCTGAAATATGCCATCAGGCTTGGATTCAAGAGAATCAAAGT
ATATGGTGACTCTCAACTAGTCTGTTATCAGGTGAAAGGTACATGGCAAGCAAAGAAAGA
GAACATGATGGAACTGTGCAAAGAAGTGAGAAAACTTCAAGAGAACTTCATCTCTTTTGA
GGTCCACCATGTGCGACGGGAATGGAACTCTGAGGCTGATCGCCAGGCAAACATAGCCAT
CACTCTCGCAAGCGGCGCGGTTTCTGAGGAGCGTGGCGATGGCTTCTGAGCTTCTGACAG
TAACCTTGTCCGACTATAACTAGTCTATGTATTTAGTTAACAGTATTCTACCCTAAAAAG
AAGTTAATGGTAGTCTGTGTTGGAGTGGTTATCTGTGTCCATTTTCTTGTATTTGAACTT
GGTTCTCTGTCTCCAGTTGAATGTGTTGCTTATTACTGGTTGGGCCTCTTTTGGACAATC
AGGTGGTTTTCTTGGCGTAGACTTCCATTCGATGGACTTTATTTTGGTTTGCTTTGTTTG
CCTCTTCACAATTATTTTTGGCAGAAAGAATAGTATTCCCTCAGTTCACAAATAGGAGTA
TAAGATGTTCTAACTTTTTTCTGCATCAGATGTATATATACATGTTTTAGTGTGTCTGTT
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_4406 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32060.1	324	5e-153	protein\|retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Brachypodium v1_2	Bradi3g27990.1	320	8e-170
Arabidopsis v10	AT3G01410.1	294	1e-74	Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr3:153650-155439 REVERSE LENGTH=294