barSeed - Barley Seed Development Database

Probe CUST_6537_PI390587928

Source Contig U35_4411

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6537_PI390587928	Hv_44K_v2	GTACTCATCTGAGAAGAGAGCTATGAGTGTTGGGGAATAAGATGCTTTAGGGCATAGTTT	1433	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.300	2.058	1.162	0.748	0.354	0.346
Raw	1093.782	1534.730	750.367	749.350	126.232	133.454

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36997.1	2081	2e-24	1962 - 2021	100	60 / 60	plus	ABC10100
JLOC1	JLOC1_23896.1	2092	8e-25	1962 - 2021	100	60 / 60	plus
Harvest21	ABC10100	1493	3e-25	1434 - 1493	100	60 / 60	plus	ABC10100
Harvest35	U35_4411	1493	3e-25	1434 - 1493	100	60 / 60	plus

Contig Sequence (1493 bp)

>U35_4411 1493 Hv_44K_v2
GGAGAGAGAGAGGTATTGAAAAACAACCGTTCCAACTTCCTGACTTCATTGCTGCGACTG
GAATAGAAAAAATAAGACAGGCATATATCGAGAAAGAGGATAGCAAAAAGTTGAAGCAGA
AGCAGCGGGAGCGTATGCAGCCAAAAATGGGCAAGATGGATATAGATTATCAGGTTTTAC
ATGACGCCTTCTTCAAATATCAAACAAAACCCAAATTGACTAGTCATGGTGACCTTTACT
ACGAAGGGAAAGAGTTTGAGGTCAAGCTTAGGGAAATGAAACCAGGTATGCTATCCCGAG
AACTTAAAGAAGCTCTTGGTATGCCAGAAGGTGCACCGCCTCCATGGCTTATAAACATGC
AGAGATATGGTCCTCCACCCTCCTACCCTTCGCTAAAGATTCCTGGTCTGAATGCCCCAA
TTCCTCCTGGTGCTACTTTTGGTTACCGGCCCGGGGAATGGGGAAAGCCTCCTGTGGATG
AGCATGGACGCCCCCTCTACGGAGATGTTTTTGGTATCCTACAGCTGGATGAACCTAATT
ATGATGAGGAGCCTGTTGACCGCAGCAAGCATTGGGGAGACTTGGAGGAGGAAGAGGAAG
AGGAGGAAGATGACGACGAGGAAGAGGAAGAGGAGCTAATGGAAGATGAAGACATGGAAG
CTGGCATGCAGTCTGTCGACACCATGTCAAGCACTCCCACTGGCGTGGAAACACCTGATG
TCATTGATCTCCGGAAGCAACAGAGGAAAGAGTCTGAAAGGCCAACAGATAAGCAGTTAT
ACCAGGTTCTTGAGCAGAAGGAGGAGAAAATCGCACCAGGAACCCTCTATGGATCAAGCC
ATACGTATGTGGTTGGGGCACAGGATAAAGCTGGGGTTAAAAGGGTTGATCTTCTCAAGA
ATCAAAAGTCTGACAAAGTGGACGTCACCATACATCCCGAAGAGCTCGAAGTTATGGACG
ATGTTCTGGCAGCCAAGTACGAAGAAGCCCGTGAGGAGGAGAAGCTACGGAACCAGAAGG
AAGATTTCAGCGACATGGTGGCGGAGAACGCGAGCAAGAGGAAGAGGAAGCACGAGAAGG
ACGGGAAATCTTCCAAAAAGAAGGACTTCAAGTTCTAGACGGCCTCGTTTTGTTACGGTT
ACTCTTCCGTTTTCCCAGGAGGAGGATGTTTCCATTTCTTCCTGTAGCCTGTACTCTAAA
TTAAGCTGTGTATGTATACTTAGCCTCTGGCAAATGTTGAAGTGCTGGATGAGAAGACCA
GATGAAAAAGGAAGTGAAGCTGTGGTCCATGCATGAGAACAACTTGTGATGTTAAATGTA
ACAGCTAGCATTAATCCTTTGCTGTCATGAAGAGTAATGATAAGTTAAGTGCTGAATTGC
ACATTCTGAAACCTGCAGGTGAAGCTGTATCATTGAATCACTGTTTTGTACTAGTACTCA
TCTGAGAAGAGAGCTATGAGTGTTGGGGAATAAGATGCTTTAGGGCATAGTTT

Homology of Contig U35_4411 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58090.1	583	0.0	protein\|PSP domain containing protein, expressed
Brachypodium v1_2	Bradi3g56730.1	573	0.0
Arabidopsis v10	AT4G21660.2	598	2e-163	proline-rich spliceosome-associated (PSP) family protein \| chr4:11506259-11509772 REVERSE LENGTH=598