barSeed - Barley Seed Development Database

Probe CUST_652_PI390587928

Source Contig U35_26046

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_652_PI390587928	Hv_44K_v2	ACCCAGCAAAGCATACTGCTTTCCCACTGATATAGTTGTAAAAGTGAGTGATGCAGGGTT	391	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2517.1	2717	2e-24	2480 - 2539	100	60 / 60	plus	ABC24067
MLOC	MLOC_2517.7	2313	2e-24	1770 - 1829	100	60 / 60	plus	ABC24067
MLOC	MLOC_2517.9	1249	2e-24	1012 - 1071	100	60 / 60	plus	ABC24067
MLOC	MLOC_45975.1	694	3e-21	369 - 428	97	58 / 60	plus	ABC24067
JLOC1	JLOC1_1506.12	998	8e-25	349 - 408	100	60 / 60	plus
JLOC1	JLOC1_1506.3	1476	8e-25	827 - 886	100	60 / 60	plus
JLOC1	JLOC1_29807.1	664	2e-21	344 - 403	97	58 / 60	plus
Harvest21	ABC33534	613	3e-25	392 - 451	100	60 / 60	plus
Harvest35	U35_26046	924	3e-25	392 - 451	100	60 / 60	plus

Contig Sequence (924 bp)

>U35_26046 924 Hv_44K_v2
TGTTCCCATGTTATATTGTTCCAGTCAAATCAATTGTGTAAATCTTTCCATGTACATTGG
CTTTGTCAGGAAAGGAAGCAGATTGCTTGGGAGTCTTCTTCCAAATTCATCGATATGTTT
ATGGCACTGTCCAATAGCCTACAGTGGTATGCCATCAAAGCCCAAGAACTATTTTATATG
CGTAGCTAATTGCTTATTGATGTGCTAAAGTCTTGCTGAATTTGAACAAATGTTGAATGA
ACCATGTTTGGCTGTTTTGTGAGTGCCAGTCAAGTTTGCACTGCAACGTCTCATTTAGTT
CTCTATGTATCTACGTTCTCCTGGTTGTTTTGGACATCATGCTATTTTCTAATATATGTT
TGATCTAACAGTTTTTACTTGCATGGCCTGCACCCAGCAAAGCATACTGCTTTCCCACTG
ATATAGTTGTAAAAGTGAGTGATGCAGGGTTTAAATGATTTGTTATCCAGGCCAATAATA
TGCAGCGTCCTTTCCTGGCTGGCTATACAATTAAACTATTGTGTAAAAGCTACAGTGATG
ACACCTATGGACCAACAGCGTGGAGCACCAGCACATTTCCTATGCACTTTTAGACGGCAG
TCTCATCAACAAGTTTCCCTACATAGTGGCGGCAATGGTAGGAGTGGCAGATTGTGCAGA
GGAAGAGGATGAGAAGAAACTTGTGCTTCTCATCCAATCTTTGTAGAACTCTCTTGATGT
GCGATTGTGCACTTGTTGGATCCTCTTTCTATGCACTTGCACTTGCAGAAGTATTCTTTT
GTGCATTGTAAAATTATTTTGATGTGCACTTGTTAGGCCTTGAACCTTGATGTGTAGAGG
AGTCGTGGATGATGTATTGTATGTCATGTGATGTGCTATTGAAATGAAATATACAGTTTA
TTTGCAATAAAAAAAAAAAAAAAA

Homology of Contig U35_26046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None