barSeed - Barley Seed Development Database

Probe CUST_6529_PI390587928

Source Contig U35_4419

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6529_PI390587928	Hv_44K_v2	GGTGCATATGCCTGAGTAACTGGATCATGATTAATTTGTCAAAAATATTTATGCCATCGT	902	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.652	3.991	0.994	0.926	0.415	0.765
Raw	418.556	551.297	120.794	182.237	27.520	56.073

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10893.1	1417	2e-24	1354 - 1413	100	60 / 60	plus	ABC13190
MLOC	MLOC_10893.3	802	2e-24	662 - 721	100	60 / 60	plus	ABC13190
MLOC	MLOC_10893.4	728	2e-24	588 - 647	100	60 / 60	plus	ABC13190
MLOC	MLOC_10893.2	793	2e-24	712 - 771	100	60 / 60	plus	ABC13190
JLOC1	JLOC1_7165.1	1130	8e-25	1052 - 1111	100	60 / 60	plus
Harvest21	ABC13190	986	3e-25	903 - 962	100	60 / 60	plus	ABC13190
Harvest35	U35_4419	986	3e-25	903 - 962	100	60 / 60	plus

Contig Sequence (986 bp)

>U35_4419 986 Hv_44K_v2
AAGATCGAGCAGCTAGCAGCAAAGACAAGCAAGCGGTAGTGCAATCTAGAGCGCGGGACG
CAACGGTGCGATCACCTAAGATAGGGAGCCACGAGGACGCGACGAGGCGGCCACTGATGG
CGGCACCGGCGGCGAGGAGCGTGGGCGTGGCGGAGCGCGCGCTGCGCGGGGTGGCGGACC
TGATCAAGCTGCTGCCGAGCGGCACGGTGTTCATGTTCCAGTTCCTCAGCCCGCTCGTCA
CCAACAACGGCCACTGCGCCGCCTACAACAAGGTGCTCTCCGGCGCGCTCCTGGCGCTCT
GCGGCGCCTTCTGCGCCTTCTCCTCCTTCACCGACAGCTACGTCGGATCCGACGGCAGGG
TCTACTACGGCGTCGTCACGCGCCGCGGGATGCGCACCTTCTCCGCCGACCCGGACGCCG
GCGCCGCCAGGGACCTGTCCGGGTACCGCCTCCGCGCCGGCGACTTCGTGCACGCCGCGC
TCTCGCTCATGGTGTTCGCCACCCTCGCGCTGCTCGACAGGGACACGGTCTCCTGCCTCT
ACCCGGCGATGGAGGCCAGCGAGAGGACCATGATGGCCGTGCTGCCGCCGGTCGTCGGCG
GCGTTGCCAGCTACGCCTTCATGATGTTCCCCAACAATCGCCACGGCATCGGCTACCAGC
CCACCCGCGCAACCGAGGACTTCCAGCACAAGCACTAGAGTGTTCATGGCGTCCATCGGC
GTGGCCTGAATTGATCAATTCCTGTCAATTTCTTCGCAGTGTTTGCATGCATGATCAACT
TGGTCATCATCTGGCTGCAAAGACAAAACTCAAAGTGTGGTGGTGTGATCTGATCTGTGA
TGTTTGAGTAACGTGTCGTCACCTTGTCGTTCTTGATTTGTCAAAGCTTGTACTGATACT
GTGGTGCATATGCCTGAGTAACTGGATCATGATTAATTTGTCAAAAATATTTATGCCATC
GTCAAGACTCAAAAAAAAAAAAAAAA

Homology of Contig U35_4419 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g25440.1	194	4e-106	protein\|expressed protein
Brachypodium v1_2	Bradi1g61470.1	194	6e-107
Arabidopsis v10	None