barSeed - Barley Seed Development Database

Probe CUST_6519_PI390587928

Source Contig U35_4429

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6519_PI390587928	Hv_44K_v2	GCGAGAAAAACCACTTGCCTTTTGTTAGTTCTTCAATGAAGAAAGAACTGCTTATCTAAA	1859	GeneList: brown MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.606	3.498	0.934	0.694	0.609	0.998
Raw	30.311	59.345	14.821	18.095	2.675	8.170

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68357.1	2221	2e-23	2160 - 2217	100	58 / 58	plus	ABC13013
MLOC	AK361174	1916	7e-23	1860 - 1916	100	57 / 57	plus	ABC13013
JLOC1	JLOC1_45216.1	2176	1e-23	2001 - 2058	100	58 / 58	plus
Harvest21	ABC13013	800	3e-25	727 - 786	100	60 / 60	plus	ABC13013
Harvest35	U35_4429	1933	3e-25	1860 - 1919	100	60 / 60	plus

Contig Sequence (1933 bp)

>U35_4429 1933 Hv_44K_v2
CAAGCCACAAGGCGCGCGCACACGCATGTACTCGATCGTTCAGTACCCCTACCACCGCCA
TTAGAGCGGCATCGTAGACGACACCACCATTGTGTGGGTCGAAATGGGGCGAGGGAGAAG
GAGGAGCGGCGTGGGAACGGCCGTGCCGCTGCCGATCTTGGTGCTGCTGGTGTTGGTGTT
GATGGCCATGGCGGCGGCAGAGAGGGCCGACGATGCCGATGGTGTCGACGTTGGCGAAGG
GGAAGGGGAAGACGAGGCTTTCGAGAGGAGGTTCTTGAAGCTGTGGACCGACGGAGGCGG
CGGGGACAAGGAGGATCACCTCAGATGGTACGGTGATGACGACGACGACCGCGATTATGG
TCATACTTATGATGATCAAGAGGTGGAAGAGGCAGAGGAGGAGGAGGAAGAGGAAGACGA
CATCATGTTGAGGGCGACCAGATGCCCGCGTCCGAAGAAGAAGAAGAAGAAGAGGAACGT
CGTAAAGGTCGACAGCTTCGGCGCCGTGGGCGACGGCTGCGCCGACGACACGGAGGCGTT
CGCTAAGGCCTGGGAGAAGGCGTGCTCGCTGAAGGACGCCGTGCTGGTGGTGACCGCCGG
CCGGCGCTACAAGGTCGGCCCGAGCAAGTTCATGGGCCCGTGCAAGGAGAGGCTGGTGGT
GCTGATCCACGGCACCATCGTGGCGCCGGAGGAGCCGTCGCAGTGGGACCCCAAGAGCCC
GCGTCTGTGGCTCCTCTTCGGCGGGCTCGTCGGCGCGCGCATCCAAGGCGGTGGTGTCAT
CGACGGCTCCGGCTCGAAGTGGTGGGCCAACTCCTGCAAGGTCGACCGGTCTAAGCCGTG
CAAGGGCGCGCCGACGGCGGTGACCATCGACTCGTGCCGTGGCGTGCGGGTGCGCGGCCT
GACGATCCAGAACGCGCAGCAGATGCACCTGACGGTGTCGCGGTCGCGCGGGGTGCGGCT
GGACGGGATGGCCATCCAGGCGCCGGGGGACAGCCCCAACACCGACGGCATCCACGTGGC
CGAGTCCACCGCGGTGACCATCACCGGCGCGCGCATCGGCACCGGCGACGACTGCGTGTC
CATCTCCAACGCCAGCTTCGCCGTGAAGATGAAGGGCATCGTGTGCGACCCGGGCCACGG
CATCAGCATCGGCAGCCTGGGGCAGGGCGGCTCCTACGCCGCCGTGGAGGGGGTGACCCT
CGACGGCGCCCGCATCGCGCGCGCCCAGAACGGCGTCCGGATCAAGACCTGGCAGGGCGG
CGCCGGGTACGTGCGCAACGTCCGGTTCACCAACGTGCTCGTCGACGGCGTCGACCACCC
CATCATCATCGACCAGTTCTACTGCGACTCCAGGACGCCGTGCGCGAACCGGAGCACCAA
CGTGGCCGTCAGCAACGTCATGTACCGGAACATCTCCGGCACGTCCACGCGGGACGAGGC
CATCAAGCTCGCCTGCAGCGACGCCGTGCCATGCAGCGACATCGTGCTCAGCAACATCAA
CCTGCTCGGGGACGACGGCGCCGAGGTGCAGGCCGTGTGCAACTGCGCCATGGGGCTGGG
CTACGACCCCGTCCGCCCCGCCGTCGACTGCCTCAGGAACAACGCGTGCGGCGGCGGCGG
AGGGCTGAAGCTAGGCGAGGAGGAGGAGCCGTCGACGACGACGGCCGCGCCGCTGCACAC
CGAGCTGTGAAAATCGGACATGATGCCCTTTGCTCGATTTTCACCCCAGCTGTTACTAAG
TGCTGCAGTTAAGTAACTACTAGGTTTTTTGTTTGTGTGTCTATATCGTCTGAAGTATCG
ATAAATTAAGATCTACTGTACTGTACTACGATGTTACATGCATGTACACATGGTGATCGG
CGAGAAAAACCACTTGCCTTTTGTTAGTTCTTCAATGAAGAAAGAACTGCTTATCTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_4429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g03750.1	509	0.0	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi3g02850.1	510	0.0
Arabidopsis v10	AT1G23460.1	460	4e-141	Pectin lyase-like superfamily protein \| chr1:8327382-8329622 FORWARD LENGTH=460