barSeed - Barley Seed Development Database

Probe CUST_6508_PI390587928

Source Contig U35_4440

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6508_PI390587928	Hv_44K_v2	CATATTATGTGCACTTAGATCCTTATATGCAAACCATATTCAACCTGACAGCTAATGCTG	922	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5938.4	2954	2e-24	1844 - 1903	100	60 / 60	minus	ABC08248 ABC18711
MLOC	MLOC_5938.5	2770	2e-24	1800 - 1859	100	60 / 60	minus	ABC08248 ABC18711
MLOC	MLOC_5938.6	2410	2e-24	1429 - 1488	100	60 / 60	minus	ABC08248
MLOC	MLOC_5938.2	5949	2e-24	4972 - 5031	100	60 / 60	minus	ABC08248 ABC18711
MLOC	MLOC_5938.1	5946	2e-24	4972 - 5031	100	60 / 60	minus	ABC08248 ABC18711
MLOC	MLOC_5938.3	5192	2e-24	4183 - 4242	100	60 / 60	minus	ABC08248 ABC18711
JLOC1	JLOC1_3855.2	5536	8e-25	1054 - 1113	100	60 / 60	plus
JLOC1	JLOC1_3855.1	5541	8e-25	1059 - 1118	100	60 / 60	plus
JLOC1	JLOC1_3854.1	5146	8e-25	4237 - 4296	100	60 / 60	minus
Harvest21	ABC20902	912	3e-25	850 - 909	100	60 / 60	plus
Harvest35	U35_4440	985	3e-25	923 - 982	100	60 / 60	plus

Contig Sequence (985 bp)

>U35_4440 985 Hv_44K_v2
GGCCTATCCCCAAAACCCAGAATCCCGCCTCTAAACCCTAGCCGCCGGCGCTGCCCCTAT
TCCCCTCCCCCTCCTCCTCCGCAGTCTTCTTCCATTTGTCTGGGAGGCGGGCAGGCGAGC
GAGCGAGCGCGGAAGCATCCCCCGGCAGATTCGTTCTTCTGGGCAGGTGCAACAGTCATG
GATATCACTCAGATTCTGCTAGCTGCTCAGTCTCCAGATGGTAACCTTCGCTCAGCAGCA
GAAGCCAACATCAAGCAGTTCCAGGAGCAGAATCTTCCCAACTTCCTCCTATCCTTGTCG
GTGGAGTTATCGAATGATGAAAGGCCACCAGAGTCTAGAAGACTTGCTGGTATTATCCTT
AAGAATTCACTGGACGCAAAAGATTCTGCAAGGAAGGAGCTGCTGATTCAGCAATGGGTC
AGCTTGGATCACTCGATCAAATCGCAGATTAAGGAGTCATTGCTGATAACACTAGGATCT
TCGGTGGGTGATGCCCGGCAGACGTCATCACAAGTCATTGCAAAGATTGCATCCATTGAG
ATACCCCGTCGGGAATGGCAAGACCTCATTGCCAAATTGCTGAGCAACATGACTCAGCCT
GGGGCCTCTGCGCCACTAAAGCAAGCAACTCTAGAAGCATTGGGGTATGTCTGTGAGGAG
ATTCCTCCTGAGCACTTGGAGCAGGATCAAGTGAATGCTGTTCTGACTGCTGTGGTTCAG
GGGATGAACCAGACAGAGCTAAGCTCTGAAGTCCGTCTTGCAGCAGTCAAAGCTCTATAT
AATGCTCTTGACTTTGCTGAGAGCAACTTTGCAAATGAGATGGAGAGGACCTTTATAATG
AAGGTAATTTGTGATACTGCTGTATCTAAAGAAGTGGAGATCAGACAGGCAGCCTTTGAA
TGCCTTGTGGCAATTGCATCCACATATTATGTGCACTTAGATCCTTATATGCAAACCATA
TTCAACCTGACAGCTAATGCTGTAA

Homology of Contig U35_4440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28510.2	869	2e-157	protein\|importin subunit beta, putative, expressed
Brachypodium v1_2	Bradi4g00730.1	869	8e-163
Arabidopsis v10	AT3G08943.1	871	3e-116	ARM repeat superfamily protein \| chr3:2719198-2721911 REVERSE LENGTH=871