barSeed - Barley Seed Development Database

Probe CUST_6493_PI390587928

Source Contig U35_4455

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6493_PI390587928	Hv_44K_v2	CATAAGTCACAGTAATCTAGGGGGCTTTTCAGGATTTCACTTTTTATTCTTGATATCAGT	1132	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.421	1.482	1.218	0.880	0.425	0.437
Raw	3450.230	5581.593	4062.190	4464.037	774.762	867.959

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_37278.2	4692	8e-25	4277 - 4336	100	60 / 60	plus
JLOC1	JLOC1_37278.1	4830	8e-25	4415 - 4474	100	60 / 60	plus
Harvest21	ABC10943	1209	3e-25	1133 - 1192	100	60 / 60	plus	ABC10943
Harvest35	U35_4455	1209	3e-25	1133 - 1192	100	60 / 60	plus

Contig Sequence (1209 bp)

>U35_4455 1209 Hv_44K_v2
GAAATTCCAGGGTCAACAAAATGATTTTATTTTATTGTCTCTTGTCCGGACCCGATTTGT
GGGTCATCTTCGTGATGTCAGAAGGCTTATTGTGGCAATGTCCCGTGCTCGTTTGGGTTT
GTATGTGTTCTGCCGCCGTTCTCTGTTTGAACAATGCTATGAATTGCAACCAACATTCCA
GCTTCTACTCCAAAGGCCTGATAAGCTTGCCTTGAATCTTGAAGAGTGCACTCCGTTTAC
AGTGCGACCTTTGGGTGAAGCTGGAAACATTCATTATATTACTGATGTTGAAGATATTGG
ACACTTGGTGAACTTCAGACTGGAACATCTCCGCCAGATGCAATGCATGCAATATTATAC
ACCCCATGCAAATGCTGATGCAGCTCCTCCTGAAACTGGCAATGGTGATTTTGTTTTGGA
TAATGTGAAGGATGGCACAGAGAAAGAAACTGGTGAGGCAACTGATGCTGTGAACAATGA
CAAGATAGAGGAAGACACTGTTGAGTCAAAAGATGATATGGTGCAGGAAGTAAACAAGAT
GGATGAAGGTAATGTGACTATAGAAGACGAGATGGGGGAAGAAAGTGCGGATGAGGCTAA
GGACAAGATGGATGAAGGTAATGTGACTATAGAAGACAAGATGGGGGAAGAAAGTGCGGA
TGAGGCTAAGGACAAGATGGTGGAAGCAACTGCTGAAGTGGCTATTGGGAACAACATAGT
GGAAGTAAATGCTGACGTGGCTAAGGACAAGATGGGCGAAGAAAAAGCATGTAAAAGGGA
GCAAGATTGACCTGATATAATCGCTGGCTGATTGGAATAGTGACCCTACCTTCATTTTTA
TGCACGGACTTTGTCTGCTTCAAATATTTGATTTAGGGAACTGGGTGTTGTCTCACAGAG
TAACACGGAACTTCAGTCGCTGAAGGCCGAACCAAGACATTAAAAAACGTATGGTCCTGT
CAAAAGAACATGCCTCCAGATGTCCCTTGTCTGAACCTCCATCAAGTGTTTCTGCAATGA
TAACTTCTCCAACTCTTAACATAGATATTCTAGAGGACGCTGGAACATTGGTGTTGCGCA
ATTTTTGCGTATTAGGTTTATGTTCTGTAATTTGAGAGATAATGTGGGTACACATAAGTC
ACAGTAATCTAGGGGGCTTTTCAGGATTTCACTTTTTATTCTTGATATCAGTTTAAAAAA
AAAAAAAAA

Homology of Contig U35_4455 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g26960.1	1582	2e-85	protein\|intron-binding protein aquarius, putative, expressed
Brachypodium v1_2	Bradi1g60890.1	1566	1e-101
Arabidopsis v10	None