barSeed - Barley Seed Development Database

Probe CUST_6488_PI390587928

Source Contig U35_15942

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6488_PI390587928	Hv_44K_v2	CCAGTGCTTGCAGTTGGTGTTTCATTCAAGTTAATTACGAAGAAATCCTACTCTCGTTAA	2510	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.290	1.261	1.172	0.904	0.309	0.310
Raw	1464.900	2279.371	1810.123	2205.067	266.237	287.625

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5181.2	2987	6e-24	2800 - 2858	100	59 / 59	plus	ABC04315 ABC49871
JLOC1	JLOC1_3317.1	2687	3e-24	2557 - 2615	100	59 / 59	plus
Harvest21	ABC04314	2578	3e-25	2504 - 2563	100	60 / 60	plus
Harvest35	U35_15942	2585	3e-25	2511 - 2570	100	60 / 60	plus

Contig Sequence (2585 bp)

>U35_15942 2585 Hv_44K_v2
GGCCGCCGGACGCCCGCCCGCCGCCTCCACCGAGGCGAAGCTCCGTCCCTCCGCCTCCTC
CGCCGCCTCGCGACGAATAAGTAGCAAATCTTTACGCCGGCAAGATGGTGCAGTATAATT
TCAAGAAAATCACTGTTGTCCCTCCTGGGAAGGACTTCATTGACATAATCTTGTCCCGCA
CTCAGAGGCAAACACCAACTGTTGTCCACAAGGGCTATGCTATCAACCGCATTCGCCAGT
TCTATATGCGCAAGGTTCGCTATACTCAGCAGAACTTCTATGAGAAGCTTTCCACCATCA
TCGATGAGTTCCCCAGACTGGATGACATCCATCCTTTCTATGGCGATCTCCTCCATGTGC
TCTACAACAAGGATCACTACAAACTTGCCTTGGGTCAGATCAATACGGCTAGGAATATCA
TTGCAAAGATCTCCAAGGACTATCTGAGGCTGCTCAAGTATGGAGACACCCTGTACCGGT
GCAAGTGCCTGAAGGTTGCTGCACTAGGTCGCATGTGTACTGTTCTAAAGCGTATCAGTC
CTAGTTTGGCATACCTGGAGCAGATCAGGCAGCACATGGCCAGGCTTCCATCAATTGACC
CAAACACCCGTACTATCTTGATTTGTGGGTATCCAAATGTTGGGAAGAGCTCTTTCATGA
ACAAGGTTACAAGGGCTGATGTGGACGTGCAGCCTTATGCTTTCACAACAAAATCCCTTT
TTGTTGGCCATGCAGATTACAAGTATCTGCGTTACCAAGTGATTGACACTCCAGGGATCC
TTGATCGGCCTTTTGAGGATAGGAACATCATAGAAATGTGCAGTATCACCGCTCTTGCCC
ACTTGAGGGCTGCTGTGCTGTTCTTCTTGGACATCTCTGGTTCTTGTGGGTACACTATTG
CTCAGCAAGCTGCACTCTTCCACAGTATAAAATCCCTGTTCATGAATAAGCCTCTGGTCA
TTGTGTGCAACAAGACTGATTTGCAGCCGCTTGATGGGCTTTCTGAAGAGGACATGAAGC
TCGTAATGGAGATGAAGTCAGAGGCTATGAAGACTATACCGCAAGGTGGAGATCCCAGTG
AAGAGGGTGTTTTGTTGACTATGAGTGCTTTAACAGATGAGGGTGTGATGGCTGTTAAAA
ATGCTGCATGTGAGAGGCTTCTTGAGCAGAGGGTGGAGATCAAGATGAAGTCAAAGAAGA
TCAATGACTGCTTAAATAGGTTTCATGTTGCTATGCCCAAGCCTCGTGACAACAGAGATA
GGCCTACTTGCATTCCTCAGGCTGTTGTTGAAGCTCAAGCAATTGCTGCTGCAAAGGAAA
AGAAGAAACTTGAGAGGGACCTTGAGAATGAGAATGGAGGTGCTGGTGTCTATTCTGCCA
GTCTCAAAAAGCATTACTTGTTGGCTGATGATGAATGGAAGGAAGATATTCTCCCTGAGA
TATTGGATGGGCATAATGTTGCCGATTTCCTGGATCCGGATATCTTGGAAAGGTGTGAGG
AACTGGAAAGGGAGGAGGGTCTTCGTCTTGAAGAAGAAGCTGCTCAGGATGCTTTCATGA
TTGATGGCCATGACGAATTAACTGAAGAACAGCGTGAGATACTGGGTAAGATTAGGAAGA
AGAAGGCAATGCTCATCCAAGAGCATAGGATGAAGAAGAGTACTGCAGAGAGCCGTCCTA
TCGTTCCAAGGAAGCATGACAAGGATAGGAAATTCACAACCAAGAGAATGGGCAGACAAC
TCACATCCATGGGCGTTGATCCTACTGCAGCTGTGAACCGGCTTCGCAGCCAGTCAAGAG
GCCGTAAGCGTGAGAGGTCACTGAGCAGAGCTGATGGTGACAATGCTATGGACGTTGATG
GCCAGCACTCAGACAAGAAGCTGCGTACAAGGTCGAGGTCTAGGTCCAAATCACGACCAA
TTGAAGAGGTCGTACCAGGTGACGGGATCCGGGATGTTGCTCAAAAGAAGAAGGCCATCA
AGAAATCAAGGGACTCTGTCAAGAACAGGAACAAGGAGGCTCGCCGTGGAGAGGCGGATC
GCGTCATCCCCACGTTGAAACCGAAGCATCTCTTCTCTGGAAAACGAGGAATTGGGAAGA
CCAGCAGGCGGTAAACAAGTCAATGTGGACGTTGCTGCTTGCGATCACTCGATCAGGAAC
TGCAGAATCACTGCCATTTTTCGTGCTGGGCATCGGGGGAGGCTTGAGCGCCAATCTGGC
AGGAGATACTACCATCTACTGCATTTTTATCTTTGTCTGGCTTTTGCTCTCTGTTACTCG
TTTGTTAGACTACATCGTTGTCGAACTATATGCTTGTACCATCGGTCTACTCCGCACTAG
TGCGGAGCGGAGTCAGATTTTGTTTGATGGTGTTGTTAATGTATTTGAACAGGCGCTTGT
TTTCCTTTCCAAAAAAAAAAAAATGTTTTGATACTAAAAAAAAAAAAAACGGTCTGGAAC
CTGTGAGGTTCAGCAATTTCAACGGCAGCCACCGCAGTTGGCTTCAGGCGCCAGTGCTTG
CAGTTGGTGTTTCATTCAAGTTAATTACGAAGAAATCCTACTCTCGTTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_15942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g09570.1	677	protein\|nucleolar GTP-binding protein 1, putative, expressed
Brachypodium v1_2	Bradi1g46650.1	667
Arabidopsis v10	AT1G50920.1	671	Nucleolar GTP-binding protein \| chr1:18870555-18872570 FORWARD LENGTH=671